Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG465_RS19070 Genome accession   NZ_CP109580
Coordinates   4008841..4009458 (-) Length   205 a.a.
NCBI ID   WP_405787239.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01367     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4003841..4014458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG465_RS19055 (OG465_19010) - 4005662..4006603 (+) 942 WP_405787236.1 hypothetical protein -
  OG465_RS19060 (OG465_19015) clpX 4006681..4007967 (-) 1287 WP_030008569.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG465_RS19065 (OG465_19020) clpP 4008121..4008786 (-) 666 WP_150257432.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG465_RS19070 (OG465_19025) clpP 4008841..4009458 (-) 618 WP_405787239.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG465_RS19075 (OG465_19030) tig 4009739..4011127 (-) 1389 WP_328790439.1 trigger factor -
  OG465_RS19090 (OG465_19050) - 4012640..4013218 (-) 579 WP_405787241.1 TIGR04222 domain-containing membrane protein -
  OG465_RS19095 (OG465_19055) - 4013531..4013725 (-) 195 WP_030008564.1 membrane protein -
  OG465_RS19100 (OG465_19060) - 4013902..4014357 (-) 456 WP_328790436.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21713.68 Da        Isoelectric Point: 4.6579

>NTDB_id=679082 OG465_RS19070 WP_405787239.1 4008841..4009458(-) (clpP) [Streptomyces sp. NBC_01367]
MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIFLYINSPGGSVTAGMAVYD
TMQYIPNDVVTIGMGMAASMGQFLLTGGAKGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAFHSG
QSVEAIIRDGDRDRWFTAEEAKDYGLIDDIMSVASNVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=679082 OG465_RS19070 WP_405787239.1 4008841..4009458(-) (clpP) [Streptomyces sp. NBC_01367]
GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT
CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTCCTGCTCCTGG
CCGCCGAGCCGGAGAAGGACATCTTCCTCTACATCAACAGCCCCGGTGGCTCCGTGACGGCCGGCATGGCCGTCTACGAC
ACCATGCAGTACATCCCCAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCCATGGGCCAGTTCCTGCTCACCGG
TGGCGCCAAGGGCAAGCGCTTCGCCCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGCGGCACCG
CCTCCGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACCAAGCAGCGGATGGCCGAGATCACCGCGTTCCACTCGGGT
CAGTCCGTCGAGGCGATCATCCGTGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCAAGGACTACGGCCTCAT
CGACGACATCATGTCGGTCGCGTCCAACGTGCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.88

93.171

0.493
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.872

91.22

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

50.543

89.756

0.454
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50

89.756

0.449
  clpP Streptococcus mutans UA159

51.445

84.39

0.434
  clpP Streptococcus pneumoniae TIGR4

50.575

84.878

0.429
  clpP Streptococcus pneumoniae Rx1

50.575

84.878

0.429
  clpP Streptococcus pneumoniae D39

50.575

84.878

0.429
  clpP Streptococcus pneumoniae R6

50.575

84.878

0.429
  clpP Streptococcus thermophilus LMD-9

49.425

84.878

0.42
  clpP Streptococcus thermophilus LMG 18311

49.425

84.878

0.42
  clpP Streptococcus pyogenes JRS4

49.425

84.878

0.42
  clpP Streptococcus pyogenes MGAS315

49.425

84.878

0.42