Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG512_RS26655 Genome accession   NZ_CP109565
Coordinates   5655673..5657082 (-) Length   469 a.a.
NCBI ID   WP_266561540.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5650673..5662082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS26630 (OG512_26520) - 5651296..5651604 (+) 309 WP_355685375.1 hypothetical protein -
  OG512_RS26635 (OG512_26525) - 5651601..5652213 (+) 613 Protein_5255 response regulator -
  OG512_RS26640 (OG512_26530) - 5652214..5652855 (-) 642 WP_356007851.1 phosphatase PAP2 family protein -
  OG512_RS26645 (OG512_26535) - 5653041..5653841 (+) 801 WP_405782738.1 hypothetical protein -
  OG512_RS26650 (OG512_26540) disA 5654436..5655560 (-) 1125 WP_116511422.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG512_RS26655 (OG512_26545) radA/sms 5655673..5657082 (-) 1410 WP_266561540.1 DNA repair protein RadA Machinery gene
  OG512_RS26660 (OG512_26550) - 5657260..5658294 (-) 1035 WP_405781076.1 IS110 family transposase -
  OG512_RS26665 (OG512_26555) - 5658373..5659827 (+) 1455 WP_405782740.1 IS110 family transposase -
  OG512_RS26670 (OG512_26560) - 5660063..5661388 (+) 1326 WP_356011380.1 IS110 family transposase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49652.73 Da        Isoelectric Point: 7.7378

>NTDB_id=678936 OG512_RS26655 WP_266561540.1 5655673..5657082(-) (radA/sms) [Streptomyces sp. NBC_01378]
MAARTKSGKDRPSYRCTECGWQTAKWLGRCGECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDARQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIKAIDDHLYLAAETDLSAVL
GHLDAVKPSLLIMDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVTEVADMGDALRVLPRSRHREAPRETEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=678936 OG512_RS26655 WP_266561540.1 5655673..5657082(-) (radA/sms) [Streptomyces sp. NBC_01378]
ATGGCTGCCCGTACGAAATCCGGCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGTGGCTGGCAGACGGCGAAATGGCT
GGGTCGCTGCGGCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTGCGGACGACCGCGCCCGGCC
GGGTCACGACGTCCGCCGTCCCGATCGGCCAGGTCGACGCCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTC
GACCGGGTCCTCGGCGGGGGCCTCGTCCCCGGCGCCGTCGTCCTGGTCGCGGGCGAGCCCGGTGTCGGCAAGTCCACCCT
CCTGCTCGACGTCGCCGCCAAGGCCGCCAGCGACGAGCACCGCACCCTGTACGTCACGGGCGAGGAGTCGGCCAGCCAGG
TCCGGATGCGCGCCGACCGCATCAAGGCGATCGACGACCATCTGTATCTCGCCGCCGAGACAGATCTGTCCGCGGTCCTC
GGCCACTTGGACGCCGTCAAGCCCAGCCTCCTGATCATGGACTCCGTGCAGACCGTCGCCTCCCCCGAGATCGACGGCGC
CCCCGGTGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGGCCACCCTCC
TCGTGGGTCACGTCACCAAGGACGGCGCCATCGCCGGACCCCGCCTCCTCGAGCACCTCGTGGACGTCGTCCTCTCCTTC
GAAGGCGACCGGCACGCGCGCCTTCGCCTCGTACGCGGCGTGAAGAACCGGTACGGGACGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAAGGCATCACCGGACTCGCCGACCCCAGCGGGCTGTTCCTCACCCGCCGCGACGAACCCGTCCCGG
GCACTTGCCTCACCGTCACCCTGGAGGGGCGGCGGCCTCTCGTCGCCGAGGTTCAGGCCCTCACCGTCGACTCCCAGATC
CCGTCCCCTCGGCGCACCACATCCGGCCTGGAGACGTCCCGCGTCTCGATGATGCTCGCCGTCCTCGAGCAGCGCGGGCG
GATCAGCGCCCTGGGAAAGCGGGACATCTACTCCGCGACCGTCGGCGGCGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CCATCGCCCTCGCCCTCGCCAGCGCCGCCAGCGACACCCCGCTCCCCAAGAACCTCGTGGCGATCGGTGAAGTCGGCCTC
GCGGGCGAGGTCAGACGGGTGACCGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACCCACGCCCTCGT
GCCGAGCGATCCGGGCAAGGTGCCGGCCGGCATGAAGGTCACCGAAGTCGCCGACATGGGGGACGCTCTGCGCGTGCTGC
CCAGGAGCCGTCACCGAGAGGCCCCACGGGAGACGGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.92

96.375

0.414
  radA Streptococcus pneumoniae D39

42.539

95.736

0.407
  radA Streptococcus pneumoniae R6

42.539

95.736

0.407
  radA Streptococcus pneumoniae Rx1

42.539

95.736

0.407
  radA Streptococcus pneumoniae TIGR4

42.539

95.736

0.407
  radA Streptococcus mitis SK321

44

90.618

0.399
  radA Streptococcus mitis NCTC 12261

44

90.618

0.399