Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MYA84_RS01210 Genome accession   NZ_CP095872
Coordinates   258760..259989 (-) Length   409 a.a.
NCBI ID   WP_004810078.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253760..264989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS01185 (MYA84_01180) - 255128..255451 (+) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -
  MYA84_RS01190 (MYA84_01185) rlmB 255604..256353 (+) 750 WP_004810085.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MYA84_RS01195 (MYA84_01190) - 256360..257283 (+) 924 WP_081405839.1 DMT family transporter -
  MYA84_RS01200 (MYA84_01195) coaE 257299..257898 (-) 600 WP_048881745.1 dephospho-CoA kinase -
  MYA84_RS01205 pilD 257900..258760 (-) 861 WP_004810080.1 prepilin peptidase Machinery gene
  MYA84_RS01210 (MYA84_01210) pilC 258760..259989 (-) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  MYA84_RS01215 (MYA84_01215) pilB 260021..261730 (-) 1710 WP_048881746.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MYA84_RS01220 (MYA84_01220) tpiA 262013..262804 (+) 792 WP_184103376.1 triose-phosphate isomerase -
  MYA84_RS01225 (MYA84_01225) secG 262818..263147 (+) 330 WP_004810073.1 preprotein translocase subunit SecG -
  MYA84_RS01255 (MYA84_01255) rimP 264209..264733 (+) 525 WP_004896325.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44984.45 Da        Isoelectric Point: 9.9331

>NTDB_id=678935 MYA84_RS01210 WP_004810078.1 258760..259989(-) (pilC) [Acinetobacter schindleri strain H4-3-C1]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=678935 MYA84_RS01210 WP_004810078.1 258760..259989(-) (pilC) [Acinetobacter schindleri strain H4-3-C1]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACATTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATCACCATTTTTACCCGTCAGCTTGCT
ACCATGATGAAAGCCGGTGTACCACTCGTACAAGGCTTTGAAATTGTGGCGGAAGGCCTTGAAAATCCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAAGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATACTTTG
ATAAGCTATTCTGTTCGCTGGTTGAATCCGGTGAACAATCCGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCGATGAAATACCCAGCAACAGTGGTTGTTGTTGCAATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTTTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCGCCTATCTT
TGGTGATCTGGTTTATAAAGCGATTATTGCCCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCGGTAATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCGACCCATTATGAAAATGAAGTCGACAATGCCGTTGATG
GTTTGACCTCCATGATGGAACCATTAATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCAATTTTCCAGATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

82.555

99.511

0.822
  pilC Pseudomonas stutzeri DSM 10701

62.217

97.066

0.604
  pilC Legionella pneumophila strain ERS1305867

54.02

97.311

0.526
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

42.647

99.756

0.425
  pilC Vibrio campbellii strain DS40M4

41.235

99.022

0.408