Detailed information NTG0678934

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MYA84_RS01205
• Genome accession: NZ_CP095872
• Coordinates: 257900..258760 (-)
• Length: 286 a.a.
• NCBI ID: WP_004810080.1
• Uniprot ID: -
• Organism: Acinetobacter schindleri strain H4-3-C1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 252900..263760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MYA84_RS01180 (MYA84_01175)	recN	253048..254709 (-)	1662	WP_048881744.1	DNA repair protein RecN	-
MYA84_RS01185 (MYA84_01180)	-	255128..255451 (+)	324	WP_004810087.1	pyrimidine/purine nucleoside phosphorylase	-
MYA84_RS01190 (MYA84_01185)	rlmB	255604..256353 (+)	750	WP_004810085.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
MYA84_RS01195 (MYA84_01190)	-	256360..257283 (+)	924	WP_081405839.1	DMT family transporter	-
MYA84_RS01200 (MYA84_01195)	coaE	257299..257898 (-)	600	WP_048881745.1	dephospho-CoA kinase	-
MYA84_RS01205	pilD	257900..258760 (-)	861	WP_004810080.1	prepilin peptidase	Machinery gene
MYA84_RS01210 (MYA84_01210)	pilC	258760..259989 (-)	1230	WP_004810078.1	type II secretion system F family protein	Machinery gene
MYA84_RS01215 (MYA84_01215)	pilB	260021..261730 (-)	1710	WP_048881746.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MYA84_RS01220 (MYA84_01220)	tpiA	262013..262804 (+)	792	WP_184103376.1	triose-phosphate isomerase	-
MYA84_RS01225 (MYA84_01225)	secG	262818..263147 (+)	330	WP_004810073.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32007.26 Da
• Isoelectric Point: 8.2629

>NTDB_id=678934 MYA84_RS01205 WP_004810080.1 257900..258760(-) (pilD) [Acinetobacter schindleri strain H4-3-C1]
MQDLILYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQLFLHPDQPIIDESKLTLSKPASTCPKCHTR
IRWYQNIPVISWLALRGKCANCQNPISARYPFIEILTAVCALTVLAVLGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYAIYTSPTSAIWGYIIGFLCLWVVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPLVVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=678934 MYA84_RS01205 WP_004810080.1 257900..258760(-) (pilD) [Acinetobacter schindleri strain H4-3-C1]
ATGCAAGATCTTATTTTATATTTCACTCAAAACCCGACTGCGCTCTATATTGCAGTCGGGCTTTTTAGTCTCTGTATCGG
TAGTTTCCTGAATGTCGTAATTTACCGCACCCCTAAAATGATGGAACAGGAATGGCGTAACGACTGCCAGCTGTTTTTAC
ACCCTGATCAACCGATCATTGATGAAAGCAAGCTCACATTAAGTAAACCTGCGTCGACCTGTCCAAAATGTCATACACGG
ATTCGCTGGTATCAAAATATTCCTGTGATCAGCTGGCTGGCTCTTCGCGGCAAATGTGCGAACTGTCAAAATCCAATTAG
TGCCCGTTATCCATTCATTGAAATTCTAACAGCAGTTTGTGCATTGACCGTTTTGGCTGTATTGGGTCCTACCATACAAA
TGTTGTTCGGTCTGGTGCTGACTTATATTCTCATTGCACTAACCTTTATTGACTTTGATACCCAGCTGCTTCCAGATCGC
TATACCCTTCCGCTTGCAGCTTTAGGCTTAGGGGTAAATAGCTATGCAATTTACACCTCACCAACTTCAGCCATCTGGGG
TTATATCATCGGCTTCCTGTGTTTATGGGTCGTGTACTACCTGTTCAAAATAGTAACTGGTAAAGAAGGCATGGGTTATG
GTGACTTTAAATTGCTGGCTGCTTTAGGTGCCTGGATGGGACCGTTAATGTTGCCACTAGTTGTATTATTGTCATCACTC
GTTGGTGCAATTATTGGCATTATTCTGTTAAAAGTACGTAAGGAAAATCAGCCTTTTGCTTTTGGTCCTTATATTGCCAT
TGCCGGCTGGATCGCTTTCCTGTGGGGCGAGCAGATTATGAAAGTCTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80.351	99.65	0.801
pilD	Acinetobacter baumannii D1279779	80	99.65	0.797
pilD	Vibrio campbellii strain DS40M4	51.773	98.601	0.51
pilD	Vibrio cholerae strain A1552	53.759	93.007	0.5
pilD	Neisseria gonorrhoeae MS11	46.886	95.455	0.448