Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG512_RS18800 Genome accession   NZ_CP109565
Coordinates   3932057..3932665 (-) Length   202 a.a.
NCBI ID   WP_266569404.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01378     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3927057..3937665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG512_RS18780 (OG512_18685) - 3928218..3929186 (+) 969 WP_355691320.1 hypothetical protein -
  OG512_RS18785 (OG512_18690) - 3929365..3929817 (+) 453 WP_355691318.1 hypothetical protein -
  OG512_RS18790 (OG512_18695) clpX 3929902..3931188 (-) 1287 WP_266564255.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG512_RS18795 (OG512_18700) clpP 3931344..3932003 (-) 660 WP_227294656.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG512_RS18800 (OG512_18705) clpP 3932057..3932665 (-) 609 WP_266569404.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG512_RS18805 (OG512_18710) tig 3932950..3934338 (-) 1389 WP_266564251.1 trigger factor -
  OG512_RS18820 (OG512_18725) - 3934856..3935050 (-) 195 WP_100594330.1 hypothetical protein -
  OG512_RS18825 (OG512_18730) - 3935586..3936734 (+) 1149 WP_355691314.1 acyltransferase family protein -
  OG512_RS18830 (OG512_18735) - 3936724..3937191 (-) 468 WP_266564246.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21263.05 Da        Isoelectric Point: 4.5319

>NTDB_id=678918 OG512_RS18800 WP_266569404.1 3932057..3932665(-) (clpP) [Streptomyces sp. NBC_01378]
MPSAAGEPSLGGGLGDQVYSRLLNDRIIFLGQQVDDEIANKITAQMLLLAAADQDKDIYLYINSPGGSVTAGMAVYDTMQ
YIQNDVVTIGMGMAASMGQFLLTGGTPGKRFALPNTDILMHQGSAGIGGTASDVKIQAEYLLRTKKRMAEITARHSGQTV
ETIIRDGDRDRWYTADEAKAYGLIDEIISAATGVPGGGGTGA

Nucleotide


Download         Length: 609 bp        

>NTDB_id=678918 OG512_RS18800 WP_266569404.1 3932057..3932665(-) (clpP) [Streptomyces sp. NBC_01378]
ATGCCTTCCGCCGCCGGTGAGCCGTCCCTCGGTGGTGGCCTCGGCGACCAGGTCTACAGCCGACTGCTCAACGACCGCAT
CATCTTCCTAGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACTGCCCAGATGCTCCTCCTGGCCGCTGCCGACC
AGGACAAGGACATCTACCTCTACATCAACAGCCCCGGCGGCTCGGTGACGGCCGGCATGGCGGTCTACGACACCATGCAG
TACATCCAGAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCCATGGGTCAGTTCCTGCTGACCGGCGGTACCCC
GGGCAAGCGCTTCGCGCTGCCGAACACGGACATTCTGATGCACCAGGGCTCCGCCGGCATCGGCGGTACGGCTTCGGACG
TCAAGATCCAGGCCGAGTACCTGCTGCGCACCAAGAAGCGCATGGCGGAGATCACCGCCCGGCACTCCGGGCAGACCGTC
GAGACGATCATCCGTGACGGTGACCGCGACCGCTGGTACACCGCCGACGAGGCCAAGGCATACGGCCTCATCGACGAGAT
CATCAGTGCCGCTACGGGTGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

51.309

94.554

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.785

94.554

0.48
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.351

91.584

0.47
  clpP Streptococcus mutans UA159

53.757

85.644

0.46
  clpP Bacillus subtilis subsp. subtilis str. 168

53.488

85.149

0.455
  clpP Streptococcus pyogenes MGAS315

52.299

86.139

0.45
  clpP Streptococcus pyogenes JRS4

52.299

86.139

0.45
  clpP Streptococcus thermophilus LMG 18311

51.724

86.139

0.446
  clpP Streptococcus thermophilus LMD-9

51.724

86.139

0.446
  clpP Streptococcus pneumoniae Rx1

51.149

86.139

0.441
  clpP Streptococcus pneumoniae D39

51.149

86.139

0.441
  clpP Streptococcus pneumoniae R6

51.149

86.139

0.441
  clpP Streptococcus pneumoniae TIGR4

51.149

86.139

0.441