Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MYA83_RS26155 Genome accession   NZ_CP095871
Coordinates   5793950..5795317 (-) Length   455 a.a.
NCBI ID   WP_060752310.1    Uniprot ID   A0A1H5ASB5
Organism   Pseudomonas palleroniana strain B-BH16-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5788950..5800317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA83_RS26130 (MYA83_25975) yjiA 5789260..5790219 (-) 960 WP_419794147.1 GTPase -
  MYA83_RS26135 (MYA83_25980) - 5790370..5790567 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  MYA83_RS26140 (MYA83_25985) - 5790583..5792649 (-) 2067 WP_161548406.1 carbon starvation CstA family protein -
  MYA83_RS26145 (MYA83_25990) - 5792823..5793191 (+) 369 WP_205344966.1 PilZ domain-containing protein -
  MYA83_RS26150 (MYA83_25995) - 5793196..5793933 (-) 738 WP_419794148.1 hypothetical protein -
  MYA83_RS26155 (MYA83_26000) radA 5793950..5795317 (-) 1368 WP_060752310.1 DNA repair protein RadA Machinery gene
  MYA83_RS26160 (MYA83_26005) - 5795353..5795892 (-) 540 WP_419794149.1 ankyrin repeat domain-containing protein -
  MYA83_RS26165 (MYA83_26010) katB 5795948..5797489 (-) 1542 WP_419794150.1 catalase KatB -
  MYA83_RS26170 (MYA83_26015) mscL 5797777..5798193 (+) 417 WP_060752313.1 large-conductance mechanosensitive channel protein MscL -
  MYA83_RS26175 (MYA83_26020) - 5798233..5799009 (-) 777 WP_419794151.1 ferredoxin--NADP reductase -
  MYA83_RS26180 (MYA83_26025) - 5799455..5800165 (+) 711 WP_419794152.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48717.19 Da        Isoelectric Point: 6.8987

>NTDB_id=678916 MYA83_RS26155 WP_060752310.1 5793950..5795317(-) (radA) [Pseudomonas palleroniana strain B-BH16-1]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPAGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=678916 MYA83_RS26155 WP_060752310.1 5793950..5795317(-) (radA) [Pseudomonas palleroniana strain B-BH16-1]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCAGCGAGTG
CGGCGCGTGGAATACCCTGACTGAAACCATGATCGAAAGCGGCGGTGCGGCGGCGCCTGCCGGGCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACGCTGGCCGAGGTCAGTGTCGAGGAGATCCCGCGGTTCTCCACGGCGTCCGGCGAGCTG
GACCGCGTGCTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGTTGATCGGTGGCGACCCGGGCATCGGCAAGTCGACCAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACTGGGGAAGAGTCGCAACAGCAAGTGG
CCATGCGCGCCCGACGGCTCGGTTTGCCCCAGGACCAACTGCGGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCC
ACGGCCCGTATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAACAACTGCAATCGGCGCC
GGGCGGGGTGTCCCAGGTGCGCGAAAGTGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTGACCAAGGAAGGGGCGCTGGCGGGGCCTCGAGTACTTGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGCCGTCTGCGTTTGTTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAACTCGGTGTGTTCGC
GATGACCGACAGGGGGTTGAAAGAAGTCTCCAACCCGTCGGCAATTTTCCTGACGCGTGCCCAGGAAGAAGTCCCGGGAA
GCGTGGTGATGGCAACGTGGGAGGGCACCCGCCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCGCGACGGGTCACCCTCGGCCTGGATCAGAACCGCCTGGCGATGCTTCTGGCGGTATTGCACCGTCACGGCGGTAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTACTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCATTGCCCCATGACCTGCTGGTGTTCGGCGAAGTCGGCCTGTCTGGC
GAAGTACGCCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCCGCCAAGCATGGTTTCAAGCGCGCTATCGTGCCCAA
GGGCAACGCGCCTAAAGAGTCGCCGGCAGGTTTGCAAATTATTGCTGTCACGCGCCTGGAGCAGGCGTTGGACGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H5ASB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464