Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG209_RS27595 Genome accession   NZ_CP109561
Coordinates   6118521..6119204 (+) Length   227 a.a.
NCBI ID   WP_123471017.1    Uniprot ID   A0ABY9I8Y3
Organism   Streptomyces sp. NBC_01383     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6113521..6124204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG209_RS27565 (OG209_27555) - 6113758..6114909 (-) 1152 WP_123471027.1 acyltransferase family protein -
  OG209_RS27570 (OG209_27560) - 6115390..6115584 (+) 195 WP_123471025.1 hypothetical protein -
  OG209_RS27585 (OG209_27575) tig 6116164..6117570 (+) 1407 WP_123471022.1 trigger factor -
  OG209_RS27590 (OG209_27580) - 6117836..6118441 (+) 606 WP_164494417.1 ATP-dependent Clp protease proteolytic subunit -
  OG209_RS27595 (OG209_27585) clpP 6118521..6119204 (+) 684 WP_123471017.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG209_RS27600 (OG209_27590) clpX 6119362..6120660 (+) 1299 WP_123471015.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG209_RS27605 (OG209_27595) - 6120733..6121725 (-) 993 WP_266412026.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24690.02 Da        Isoelectric Point: 4.6747

>NTDB_id=678865 OG209_RS27595 WP_123471017.1 6118521..6119204(+) (clpP) [Streptomyces sp. NBC_01383]
MVNTHMNNFSGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARILIHQPSSQTGREQLS
DLEIAANEILRMRSQLEELLAKHSTTPIEKIRDDIERDKILTADDALAYGLVDQIVATRKSAAGAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=678865 OG209_RS27595 WP_123471017.1 6118521..6119204(+) (clpP) [Streptomyces sp. NBC_01383]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGGGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGTACCC
CGGGCAAGCGTCTGGCGCTGCCGAACGCGCGTATCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GATCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGGAGCCAGCTGGAGGAACTGCTGGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGGGACAAGATCCTGACCGCCGATGACGCCCTGGCCTACGGCCTGGTCGACC
AGATCGTCGCGACCCGCAAGAGCGCGGCCGGAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.735

83.26

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.26

0.401
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pyogenes JRS4

45.263

83.7

0.379
  clpP Streptococcus pyogenes MGAS315

45.263

83.7

0.379
  clpP Streptococcus pneumoniae Rx1

45.026

84.141

0.379
  clpP Streptococcus pneumoniae D39

45.026

84.141

0.379
  clpP Streptococcus pneumoniae R6

45.026

84.141

0.379
  clpP Streptococcus pneumoniae TIGR4

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37