Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG204_RS11610 Genome accession   NZ_CP109556
Coordinates   2558320..2559003 (-) Length   227 a.a.
NCBI ID   WP_284347844.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01387     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2553320..2564003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG204_RS11600 (OG204_11620) - 2555783..2556802 (+) 1020 WP_405685048.1 hypothetical protein -
  OG204_RS11605 (OG204_11625) clpX 2556870..2558162 (-) 1293 WP_250298433.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG204_RS11610 (OG204_11630) clpP 2558320..2559003 (-) 684 WP_284347844.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG204_RS11615 (OG204_11635) - 2559054..2559659 (-) 606 WP_250298549.1 ATP-dependent Clp protease proteolytic subunit -
  OG204_RS11620 (OG204_11640) tig 2559951..2561357 (-) 1407 WP_250298435.1 trigger factor -
  OG204_RS11635 (OG204_11655) - 2561854..2562048 (-) 195 WP_250298436.1 hypothetical protein -
  OG204_RS11640 (OG204_11660) - 2562534..2563709 (+) 1176 WP_250298437.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24918.35 Da        Isoelectric Point: 4.5318

>NTDB_id=678576 OG204_RS11610 WP_284347844.1 2558320..2559003(-) (clpP) [Streptomyces sp. NBC_01387]
MVNTDMNDLSASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLSD
LEIAAREILRMRSQLEEMLAKHSTTPLEKIRDDIERDKILTAEDALAYGLVDQIVSTRKSTAGMLAN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=678576 OG204_RS11610 WP_284347844.1 2558320..2559003(-) (clpP) [Streptomyces sp. NBC_01387]
ATGGTGAACACCGACATGAACGACCTCTCTGCTTCCGCCAGCGGCCTCTACACCGGCCCGCAGGTCGACAACCGCTACAT
CGTTCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCGTCCGCCAACGACGTCATGGCACAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCGATCTACATCAACAGCCCCGGTGGCTCGTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCTGCGGGCACCCCCG
GCAAGCGCATGGCACTGCCCAACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCCGAC
CTGGAGATCGCGGCCCGCGAAATCCTGCGCATGCGCAGCCAGTTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGCT
GGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCGTACGGGCTGGTCGACCAGA
TCGTTTCGACCCGTAAGAGCACCGCAGGGATGCTGGCCAACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

83.7

0.427
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

83.26

0.396
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

44.737

83.7

0.374
  clpP Streptococcus pneumoniae TIGR4

44.041

85.022

0.374
  clpP Streptococcus pneumoniae D39

44.041

85.022

0.374
  clpP Streptococcus pneumoniae Rx1

44.041

85.022

0.374
  clpP Streptococcus pneumoniae R6

44.041

85.022

0.374