Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MYL51_RS01960 Genome accession   NZ_CP095816
Coordinates   422315..422851 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain FY10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 417315..427851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL51_RS01940 (MYL51_01935) aphA 417603..418316 (+) 714 WP_001317548.1 acid phosphatase AphA -
  MYL51_RS01945 (MYL51_01940) yjbQ 418427..418843 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MYL51_RS01950 (MYL51_01945) yjbR 418847..419203 (+) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  MYL51_RS01955 (MYL51_01950) uvrA 419238..422060 (-) 2823 WP_113415984.1 excinuclease ABC subunit UvrA -
  MYL51_RS01960 (MYL51_01955) ssb 422315..422851 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MYL51_RS01965 (MYL51_01960) yjcB 422950..423231 (-) 282 WP_001295689.1 YjcB family protein -
  MYL51_RS01970 (MYL51_01965) pdeC 423660..425246 (+) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  MYL51_RS01975 (MYL51_01970) soxS 425249..425572 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MYL51_RS01980 (MYL51_01975) soxR 425658..426122 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=678575 MYL51_RS01960 WP_000168305.1 422315..422851(+) (ssb) [Escherichia coli strain FY10]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=678575 MYL51_RS01960 WP_000168305.1 422315..422851(+) (ssb) [Escherichia coli strain FY10]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489