Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG906_RS22500 Genome accession   NZ_CP109500
Coordinates   5074870..5075544 (+) Length   224 a.a.
NCBI ID   WP_053674925.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5069870..5080544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS22465 (OG906_22460) - 5070542..5070997 (+) 456 WP_329445267.1 HD domain-containing protein -
  OG906_RS22470 (OG906_22465) - 5071164..5071358 (+) 195 WP_053674919.1 hypothetical protein -
  OG906_RS22475 (OG906_22470) - 5071508..5071693 (-) 186 WP_329445274.1 hypothetical protein -
  OG906_RS22490 (OG906_22485) tig 5072507..5073901 (+) 1395 WP_329445276.1 trigger factor -
  OG906_RS22495 (OG906_22490) - 5074199..5074816 (+) 618 WP_053674923.1 ATP-dependent Clp protease proteolytic subunit -
  OG906_RS22500 (OG906_22495) clpP 5074870..5075544 (+) 675 WP_053674925.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG906_RS22505 (OG906_22500) clpX 5075698..5076984 (+) 1287 WP_053674927.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG906_RS22510 (OG906_22505) - 5077067..5078032 (-) 966 WP_329445279.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24594.02 Da        Isoelectric Point: 4.6747

>NTDB_id=677977 OG906_RS22500 WP_053674925.1 5074870..5075544(+) (clpP) [Streptomyces sp. NBC_01426]
MVNTQMHMNNLSPASGLYTGAQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLIHQPSGGTGREQLS
DLEIAANEILRMRDQLETMLAKHSTTPLEKIRDDIERDKILTAEDALAYGLIDQIVSTRKSNAV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=677977 OG906_RS22500 WP_053674925.1 5074870..5075544(+) (clpP) [Streptomyces sp. NBC_01426]
ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTTTACACCGGCGCTCAGGTGGACAACCGCTA
CGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTGATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGCGACATCTCCATCTACATCAACAGCCCCGGTGGCTCCTTCACCGCGCTGACGGCGATCTACGACACCATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGCAGCC
CCGGCAAGCGCATGGCCCTTCCGAACGCCCGTGTGCTGATCCACCAGCCCTCCGGCGGCACCGGTCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCGAACGAGATCCTGCGCATGCGTGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCC
GCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACC
AGATCGTTTCGACCCGCAAGAGCAACGCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.684

84.821

0.455
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.929

0.42
  clpP Streptococcus pneumoniae D39

45.408

87.5

0.397
  clpP Streptococcus pneumoniae Rx1

45.408

87.5

0.397
  clpP Streptococcus pneumoniae R6

45.408

87.5

0.397
  clpP Streptococcus pneumoniae TIGR4

45.408

87.5

0.397
  clpP Streptococcus pyogenes JRS4

46.316

84.821

0.393
  clpP Streptococcus mutans UA159

46.316

84.821

0.393
  clpP Streptococcus pyogenes MGAS315

46.316

84.821

0.393
  clpP Streptococcus thermophilus LMG 18311

45.361

86.607

0.393
  clpP Streptococcus thermophilus LMD-9

45.361

86.607

0.393
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

85.268

0.388
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

85.268

0.379