Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MX663_RS21940 Genome accession   NZ_CP095736
Coordinates   4201051..4201569 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain N4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4190015..4201897 4201051..4201569 within 0


Gene organization within MGE regions


Location: 4190015..4201897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX663_RS21880 (MX663_21880) yyaQ 4190015..4190371 (+) 357 WP_029726097.1 MmcQ/YjbR family DNA-binding protein -
  MX663_RS21885 (MX663_21885) yyaP 4190531..4191097 (+) 567 WP_086344548.1 dihydrofolate reductase family protein -
  MX663_RS21890 (MX663_21890) - 4191374..4191536 (+) 163 Protein_4267 DUF255 domain-containing protein -
  MX663_RS21895 (MX663_21895) tet(L) 4191639..4193015 (-) 1377 WP_227058015.1 tetracycline efflux MFS transporter Tet(L) -
  MX663_RS21900 (MX663_21900) yyaL 4193365..4195434 (+) 2070 WP_247471083.1 thioredoxin domain-containing protein -
  MX663_RS21905 (MX663_21905) yyaK 4195431..4196330 (-) 900 WP_160221940.1 type II CAAX endopeptidase family protein -
  MX663_RS21910 (MX663_21910) yyaJ 4196557..4197912 (+) 1356 WP_247471085.1 MFS transporter -
  MX663_RS21915 (MX663_21915) maa 4197946..4198500 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  MX663_RS21920 (MX663_21920) yyaH 4198518..4198898 (-) 381 WP_029726089.1 VOC family protein -
  MX663_RS21925 (MX663_21925) ccpB 4198954..4199889 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  MX663_RS21930 (MX663_21930) xth 4199948..4200706 (-) 759 WP_247471087.1 exodeoxyribonuclease III -
  MX663_RS21935 (MX663_21935) rpsR 4200768..4201007 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  MX663_RS21940 (MX663_21940) ssbA 4201051..4201569 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  MX663_RS21945 (MX663_21945) rpsF 4201610..4201897 (-) 288 WP_003244064.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=677902 MX663_RS21940 WP_003219228.1 4201051..4201569(-) (ssbA) [Bacillus subtilis strain N4]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=677902 MX663_RS21940 WP_003219228.1 4201051..4201569(-) (ssbA) [Bacillus subtilis strain N4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378