Detailed information NTG0677904

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OG406_RS26270
• Genome accession: NZ_CP109499
• Coordinates: 6065089..6066375 (+)
• Length: 428 a.a.
• NCBI ID: WP_081221566.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01428
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6060089..6071375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG406_RS26240 (OG406_26240)	-	6060787..6060981 (+)	195	WP_016435177.1	hypothetical protein	-
OG406_RS26255 (OG406_26255)	tig	6061714..6063099 (+)	1386	WP_267050785.1	trigger factor	-
OG406_RS26260 (OG406_26260)	clpP	6063524..6064129 (+)	606	WP_060897745.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG406_RS26265 (OG406_26265)	clpP	6064248..6064928 (+)	681	WP_081217263.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG406_RS26270 (OG406_26270)	clpX	6065089..6066375 (+)	1287	WP_081221566.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG406_RS26275 (OG406_26275)	-	6066588..6066860 (+)	273	WP_329188092.1	hypothetical protein	-
OG406_RS26280 (OG406_26280)	-	6066928..6067911 (-)	984	WP_329188094.1	hypothetical protein	-
OG406_RS26285 (OG406_26285)	-	6068048..6070672 (+)	2625	WP_266848536.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46912.71 Da
• Isoelectric Point: 4.7360

>NTDB_id=677904 OG406_RS26270 WP_081221566.1 6065089..6066375(+) (clpX) [Streptomyces sp. NBC_01428]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQES
AKKALSVAVYNHYKRVQAGENSAGQNREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKLIESRAGAKGIGFGATIRSKRELESKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLQAVMYEVPSRKDVARVVIT
ADVVLSNVNPTLIPRDARRGGPGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=677904 OG406_RS26270 WP_081221566.1 6065089..6066375(+) (clpX) [Streptomyces sp. NBC_01428]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGTGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACGA
GCGAGGTGCGCTGGGAGGAACTCCCCAAGCCTCGCGAGATCTACGAGTTCCTCGAGGGATACGTCGTCGGACAGGAGTCC
GCGAAGAAGGCGCTCTCCGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACAGCGCGGGCCAGAATCG
CGAGGACGCCATCGAGTTGGCGAAGTCCAACATCCTCCTGCTGGGCCCCACGGGCTCCGGCAAGACGCTGCTCGCCCAGA
CCCTCGCGCGCATGCTGAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCGGGATATGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTGGCCCGCAAGAGCGAGAACCCGTCGATCACGCGTGACGTGTCCGGTGAGGGTGTCCAGCAGGCCC
TGCTCAAGATCCTCGAGGGCACGACGGCCTCGGTCCCGCCGCAGGGCGGTCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGAGCGTTCGCCGGTCTGGAGAAGCTCATCGAGTCGAGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGCTCGAAGCGGGAGCTGGAGTCCAAGGACCAGTTCGAGGACGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGGCGTCTCCCGGTGATCACCTCGGTCCACAACCTGGACCGC
GAGGCCCTCCTCCAGATTCTCGTCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGTGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGAGGCCTGC
GCGCGATCATGGAGGAAGTCCTCCAGGCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTCGCCCGCGTGGTCATCACC
GCCGACGTCGTCTTGTCGAACGTCAACCCGACCCTGATCCCCAGGGACGCCCGCCGCGGCGGCCCGGGCGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.438	93.925	0.586
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521