Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG769_RS24370 Genome accession   NZ_CP109492
Coordinates   5590048..5590728 (+) Length   226 a.a.
NCBI ID   WP_329198695.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01435     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5585048..5595728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG769_RS24340 (OG769_24320) - 5585240..5586391 (-) 1152 WP_329198691.1 acyltransferase family protein -
  OG769_RS24345 (OG769_24325) - 5586872..5587066 (+) 195 WP_093542552.1 hypothetical protein -
  OG769_RS24360 (OG769_24340) tig 5587702..5589096 (+) 1395 WP_329198693.1 trigger factor -
  OG769_RS24365 (OG769_24345) - 5589362..5589967 (+) 606 WP_329202714.1 ATP-dependent Clp protease proteolytic subunit -
  OG769_RS24370 (OG769_24350) clpP 5590048..5590728 (+) 681 WP_329198695.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG769_RS24375 (OG769_24355) clpX 5590886..5592184 (+) 1299 WP_093542560.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG769_RS24380 (OG769_24360) - 5592259..5593299 (-) 1041 WP_329202715.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24798.19 Da        Isoelectric Point: 4.6814

>NTDB_id=677752 OG769_RS24370 WP_329198695.1 5590048..5590728(+) (clpP) [Streptomyces sp. NBC_01435]
MVNTHMNNFSGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQIVSTRKQAATAV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=677752 OG769_RS24370 WP_329198695.1 5590048..5590728(+) (clpP) [Streptomyces sp. NBC_01435]
ATGGTGAACACCCATATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTACAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACCC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGGGTGCTGATCCACCAGCCGTCCTCGCAAACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGCAGGCGGCCACGGCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

84.071

0.425
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.628

0.403
  clpP Streptococcus thermophilus LMD-9

44.845

85.841

0.385
  clpP Streptococcus pyogenes JRS4

44.845

85.841

0.385
  clpP Streptococcus pyogenes MGAS315

44.845

85.841

0.385
  clpP Streptococcus thermophilus LMG 18311

44.845

85.841

0.385
  clpP Streptococcus mutans UA159

45.263

84.071

0.381
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.513

0.376
  clpP Streptococcus pneumoniae R6

44.271

84.956

0.376
  clpP Streptococcus pneumoniae TIGR4

44.271

84.956

0.376
  clpP Streptococcus pneumoniae D39

44.271

84.956

0.376
  clpP Streptococcus pneumoniae Rx1

44.271

84.956

0.376
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.513

0.372