Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QMF07_RS01940 Genome accession   NZ_CP095730
Coordinates   395017..396264 (-) Length   415 a.a.
NCBI ID   WP_033533047.1    Uniprot ID   -
Organism   Listeria innocua strain H0996     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 390017..401264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMF07_RS01915 (EWI68_01915) - 390039..390401 (-) 363 WP_003762190.1 YlbF family regulator -
  QMF07_RS01920 (EWI68_01920) - 390418..391221 (-) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  QMF07_RS01925 (EWI68_01925) - 391226..391723 (-) 498 WP_003771777.1 GNAT family N-acetyltransferase -
  QMF07_RS01930 (EWI68_01930) rny 391839..393401 (-) 1563 WP_003721904.1 ribonuclease Y -
  QMF07_RS01935 (EWI68_01935) recA 393702..394748 (-) 1047 WP_003766841.1 recombinase RecA Machinery gene
  QMF07_RS01940 (EWI68_01940) cinA 395017..396264 (-) 1248 WP_033533047.1 competence/damage-inducible protein A Machinery gene
  QMF07_RS01945 (EWI68_01945) pgsA 396331..396909 (-) 579 WP_003762173.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMF07_RS01950 (EWI68_01950) - 396999..397934 (-) 936 WP_003762172.1 RodZ family helix-turn-helix domain-containing protein -
  QMF07_RS01955 (EWI68_01955) - 397983..398714 (-) 732 WP_003771775.1 SDR family oxidoreductase -
  QMF07_RS01960 (EWI68_01960) - 398814..400100 (-) 1287 WP_185504887.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45569.74 Da        Isoelectric Point: 4.7994

>NTDB_id=677735 QMF07_RS01940 WP_033533047.1 395017..396264(-) (cinA) [Listeria innocua strain H0996]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIDIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDAFHMNKITEYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSESAEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILHRDGTFLYGYGEVSLPELVTAMLLEKNITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QTIKENGVVSSECAKEMAKNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=677735 QMF07_RS01940 WP_033533047.1 395017..396264(-) (cinA) [Listeria innocua strain H0996]
ATGGCAAGCGCAGAAATTATTGCAGTTGGAACAGAACTTTTACTAGGACAAATCGTGAACTCTAATGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTCTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTGA
TAGACATTGCTGAAAAACGTAGTGATATTCTCATTTTTACGGGTGGATTAGGTCCTACAGAAGACGATATTACGAAACAA
ATTTTAGCAGAACATCTACAGAAAAACTTAGTAGAAGATGCGTTTCATATGAACAAAATCACGGAGTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCTACTGTATTAAATAATGATTATGGCT
TTGCTGCAGGAATGTTCTTAAAAGAAAATAATCATACGTACATCTTACTTCCAGGCCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTAAGTGAAAGTGCTGAGAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGTATTGGAGAATCGCAATTAGCAGCAGATTTAAATGATATGATTTTAGCGCAAGTAAATCCTACTATTGCTACATATG
CAGGTGATAATGAAGTAGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCAAGTGCCCTTGTGAACGAAACG
GAACAAGAAATTTTACACAGAGATGGAACTTTTTTATACGGTTATGGCGAAGTTTCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAAAAAAATATCACTATTTCCGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGTATGGTCACATACAGCGAAGAGACAAAACAATCTATTCTTGAAGTCTCACCT
CAAACAATAAAAGAAAATGGCGTCGTAAGTTCAGAATGCGCGAAAGAAATGGCGAAGAATGTCAGCAGACTTTGTAACAC
TGATATAGGTATTAGTTTTACCGGCGTTGCAGGACCAGACAGTCTAGAAGGACATCCGGCAGGTACTATTTGGATAGGCT
TGCATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGAGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.554

0.506
  cinA Streptococcus mitis SK321

48.565

100

0.489
  cinA Streptococcus mutans UA159

48.558

100

0.487
  cinA Streptococcus pneumoniae TIGR4

48.095

100

0.487
  cinA Streptococcus pneumoniae Rx1

47.857

100

0.484
  cinA Streptococcus pneumoniae R6

47.857

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.971

100

0.484
  cinA Streptococcus pneumoniae D39

47.619

100

0.482
  cinA Streptococcus suis isolate S10

40.291

99.277

0.4