Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG281_RS22260 Genome accession   NZ_CP109488
Coordinates   4934030..4934713 (+) Length   227 a.a.
NCBI ID   WP_024492986.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01438     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4929030..4939713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG281_RS22230 (OG281_22245) - 4929262..4930419 (-) 1158 WP_371773185.1 acyltransferase family protein -
  OG281_RS22235 (OG281_22250) - 4930899..4931093 (+) 195 WP_145763503.1 hypothetical protein -
  OG281_RS22250 (OG281_22265) tig 4931687..4933084 (+) 1398 WP_371773186.1 trigger factor -
  OG281_RS22255 (OG281_22270) - 4933349..4933954 (+) 606 WP_199884549.1 ATP-dependent Clp protease proteolytic subunit -
  OG281_RS22260 (OG281_22275) clpP 4934030..4934713 (+) 684 WP_024492986.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG281_RS22265 (OG281_22280) clpX 4934871..4936169 (+) 1299 WP_024492987.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG281_RS22270 (OG281_22285) - 4936245..4937249 (-) 1005 WP_371773187.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24704.04 Da        Isoelectric Point: 4.6747

>NTDB_id=677670 OG281_RS22260 WP_024492986.1 4934030..4934713(+) (clpP) [Streptomyces sp. NBC_01438]
MVNTHMNNFSGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARILIHQPSSQTGREQLS
DLEIAANEILRMRTQLEELLAKHSTTPIEKIRDDIERDKILTADDALAYGLVDQIVATRKSAAGAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=677670 OG281_RS22260 WP_024492986.1 4934030..4934713(+) (clpP) [Streptomyces sp. NBC_01438]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGGGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGACAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACCC
CGGGCAAGCGCCTGGCGCTGCCGAACGCCCGTATCCTGATCCACCAGCCGTCCTCGCAGACGGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGGACCCAGCTGGAGGAGCTGCTGGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGTGACGACATCGAGCGGGACAAGATCCTGACCGCCGATGACGCCCTGGCCTACGGCCTGGTCGACC
AGATCGTCGCGACCCGCAAGAGCGCGGCCGGAGCGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.735

83.26

0.414
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

83.26

0.405
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus pneumoniae Rx1

44.792

84.581

0.379
  clpP Streptococcus pneumoniae D39

44.792

84.581

0.379
  clpP Streptococcus pneumoniae R6

44.792

84.581

0.379
  clpP Streptococcus pneumoniae TIGR4

44.792

84.581

0.379
  clpP Streptococcus pyogenes MGAS315

45.263

83.7

0.379
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Streptococcus pyogenes JRS4

45.263

83.7

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37