Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB346_RS06865 Genome accession   NZ_CP095727
Coordinates   1338347..1340038 (-) Length   563 a.a.
NCBI ID   WP_207576667.1    Uniprot ID   -
Organism   Listeria innocua strain 2010L-1951     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1333347..1345038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB346_RS06845 (AB346_06845) - 1333687..1334682 (-) 996 WP_187126558.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  AB346_RS06850 (AB346_06850) lpdA 1334707..1336134 (-) 1428 WP_003766800.1 dihydrolipoyl dehydrogenase -
  AB346_RS06855 (AB346_06855) buk 1336148..1337215 (-) 1068 WP_187122265.1 butyrate kinase -
  AB346_RS06860 (AB346_06860) - 1337352..1338218 (-) 867 WP_207576668.1 phosphate acyltransferase -
  AB346_RS06865 (AB346_06865) recN 1338347..1340038 (-) 1692 WP_207576667.1 DNA repair protein RecN Machinery gene
  AB346_RS06870 (AB346_06870) argR 1340061..1340510 (-) 450 WP_003766793.1 transcriptional regulator ArgR -
  AB346_RS06875 (AB346_06875) - 1340701..1341525 (-) 825 WP_187126560.1 TlyA family RNA methyltransferase -
  AB346_RS06880 (AB346_06880) dxs 1341522..1343442 (-) 1921 Protein_1313 1-deoxy-D-xylulose-5-phosphate synthase -
  AB346_RS06885 (AB346_06885) - 1343608..1343808 (-) 201 WP_003719639.1 cold-shock protein -
  AB346_RS06890 (AB346_06890) - 1344007..1344888 (-) 882 WP_003766784.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63578.36 Da        Isoelectric Point: 5.1896

>NTDB_id=677670 AB346_RS06865 WP_207576667.1 1338347..1340038(-) (recN) [Listeria innocua strain 2010L-1951]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNLACRNA
LLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQTNFKEYQTILREWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNVLANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEKEISTEMEKLTDSESHVGYLETKMATLKTELTKQASTLTDIRKKAAATLEKQIKQELNQLYMEKAIFSVHFE
SDKTELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTILKGEQKVEEISRMIAGIEVTELTKQHAKEMIQQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=677670 AB346_RS06865 WP_207576667.1 1338347..1340038(-) (recN) [Listeria innocua strain 2010L-1951]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTATCTTTAACTTTTCAAGAAGGGATGACGGTATT
AACAGGGGAGACCGGCGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGGGGATCGACTGATT
TTATTCGCCACGGTGAGGAACGTTTGGAGCTGCAAGGTTTGTTTGCCTTAGCAGAAGATAATCTTGCCTGCCGAAATGCG
CTTTTGGAAAATGGAATAGATGCTTCGGATGATATGGTCGTTTTGGAACGTAGCTTATTTCGCTCCGGTAAAAATAGTTG
CCGCATTAACGGAAAACTAGTAACTACGGTATTGCTACGCCAAATCGGATCTAAATTAATAGATATTCATAGTCAACATG
AGCACCAAGAATTAATGAATGAAGAATTTCATTTATCGTTACTAGATAGGTTTGCTGCGGATAAAATTAAACCTGCTTTA
ACGAAATATCAAACTAATTTTAAAGAGTACCAAACTATTTTAAGAGAATGGCAAAATTGGACGAAAAATGAGCGAGAACT
TGCACAGCGGCTCGATATGCTTCGTTTTCAACAACAAGAAATTGAAAATGCTAATTTGCAAGCTGGGGAAGAAGATCGTT
TATTAGAACAAAAAAATGTTTTAGCCAATTTTGAAAAGTTAAATGAAAACTTGCAAGGAGCGTATACGGCTATCCAAGGA
GAACCGGGCGGACTTGAATTTATTGGAGAAGCAATGCGTCAGATGGAAGCAGCCGCGAGTATTCATACGGATTATAAAGC
AGTTAGTGAGGCAATATCATCCAGTTACTATATGCTTGAAGATAGTATGAGCCAAATTAGACAATCGCTTGATCAGCTTG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGCTTGAATGATTTAAATCAACTGAAACGTAAATACGGTAAAACC
ATTGAAGATATTATTCAGTATGAAAAAGAAATTAGTACTGAAATGGAAAAGCTGACGGATAGTGAGTCCCACGTTGGGTA
TTTAGAAACTAAAATGGCCACATTAAAAACAGAACTCACAAAACAAGCAAGTACACTTACTGACATCCGTAAAAAAGCAG
CAGCCACGTTAGAAAAACAAATTAAACAAGAATTAAATCAATTATATATGGAAAAAGCTATTTTCAGCGTTCACTTTGAG
TCTGACAAAACAGAACTAACAGAATCAGGCCAAGATAGTGTCGTCTTCTATATGTCGACCAATCCAGGTGAACCGCTAAA
ACCACTTGCAAAAATCGCTTCTGGCGGTGAATTATCACGAATGATGTTAGCGCTAAAAACTATTTTTTCAAGACATCAAG
GTATTACATCTATCATTTTTGATGAAGTGGATACGGGTGTAAGCGGACGTGTTGGCCAAGCGATTGCTGAAAAAATTTAT
GCAGTCTCTGTTGGTTCACAAGTTCTTTGTATCAGTCATTTGCCTCAAGTAGCTGCAATGGCTAACCACCATTACTACAT
CACAAAAAAAGTACAAAATAAACGGACAACTACTTCCGTCACAATTTTAAAAGGCGAGCAAAAAGTAGAAGAAATCAGCC
GTATGATTGCTGGGATAGAAGTGACCGAACTAACAAAACAACACGCGAAAGAAATGATTCAACAAGCAGAAAAAGTAAAA
CAAACCTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.91

100

0.531