Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QMF10_RS05740 Genome accession   NZ_CP095726
Coordinates   652484..653731 (+) Length   415 a.a.
NCBI ID   WP_207576676.1    Uniprot ID   -
Organism   Listeria innocua strain 2010L-2059     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 647484..658731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMF10_RS05720 (EWI69_05725) - 648648..649934 (+) 1287 WP_207576674.1 pitrilysin family protein -
  QMF10_RS05725 (EWI69_05730) - 650035..650766 (+) 732 WP_207576675.1 SDR family oxidoreductase -
  QMF10_RS05730 (EWI69_05735) - 650815..651750 (+) 936 WP_185323724.1 RodZ family helix-turn-helix domain-containing protein -
  QMF10_RS05735 (EWI69_05740) pgsA 651839..652417 (+) 579 WP_185318723.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMF10_RS05740 (EWI69_05745) cinA 652484..653731 (+) 1248 WP_207576676.1 competence/damage-inducible protein A Machinery gene
  QMF10_RS05745 (EWI69_05750) recA 654000..655046 (+) 1047 WP_003766841.1 recombinase RecA Machinery gene
  QMF10_RS05750 (EWI69_05755) rny 655347..656909 (+) 1563 WP_003721904.1 ribonuclease Y -
  QMF10_RS05755 (EWI69_05760) - 657025..657522 (+) 498 WP_187122277.1 GNAT family N-acetyltransferase -
  QMF10_RS05760 (EWI69_05765) - 657527..658330 (+) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  QMF10_RS05765 (EWI69_05770) - 658347..658709 (+) 363 WP_207576677.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45538.72 Da        Isoelectric Point: 4.7417

>NTDB_id=677622 QMF10_RS05740 WP_207576676.1 652484..653731(+) (cinA) [Listeria innocua strain 2010L-2059]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDALHMNKITDYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSESAEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLEKNISISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QIIKENGVVSSECAKEMANNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=677622 QMF10_RS05740 WP_207576676.1 652484..653731(+) (cinA) [Listeria innocua strain 2010L-2059]
ATGGCAAGCGCGGAAATTATTGCAGTTGGAACAGAACTATTACTAGGACAAATTGTAAACTCTAATGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTTTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTGA
TAGAAATTGCTGAAAAACGTAGTGATATTCTCATTTTTACGGGTGGATTAGGTCCTACAGAAGACGATATTACGAAACAA
ATTCTAGCAGAACATCTACAAAAAAACTTAGTAGAAGATGCGCTTCATATGAACAAAATCACGGATTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCTACTGTATTAAATAATGATTATGGTT
TTGCTGCAGGGATGTTCTTAAAAGAGAATAATCATACGTATATATTACTTCCAGGCCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTCAGTGAAAGTGCTGAGAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGTATTGGAGAATCGCAATTAGCAGCAGATTTAAACGATATGATTTTAGCGCAAGTAAATCCTACTATTGCTACATATG
CAGGTGATAATGAAGTAGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCAAGTGCCCTTGTGAACGAAACG
GAACAAGAAATTTTACGCAGAGATGGAACTTTTTTATACGGTTATGGCGAAGTATCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAAAAAAATATTTCTATTTCGGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGCATGGTCACATACAGCGAAGAAACGAAACAATCTATTCTTGAAGTCTCACCT
CAAATAATAAAAGAAAATGGAGTCGTAAGTTCAGAATGCGCGAAAGAAATGGCGAATAATGTCAGCAGACTTTGTAACAC
TGATATAGGTATTAGTTTTACTGGCGTTGCAGGTCCAGACAGTCTAGAAGGACATCCCGCAGGTACTATTTGGATAGGCT
TACATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGGGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTGATTAAACAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.856

98.554

0.501
  cinA Streptococcus mitis SK321

48.565

100

0.489
  cinA Streptococcus pneumoniae TIGR4

48.095

100

0.487
  cinA Streptococcus pneumoniae Rx1

47.857

100

0.484
  cinA Streptococcus pneumoniae R6

47.857

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.971

100

0.484
  cinA Streptococcus mutans UA159

48.077

100

0.482
  cinA Streptococcus pneumoniae D39

47.619

100

0.482
  cinA Streptococcus suis isolate S10

40.534

99.277

0.402