Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AB348_RS00815 Genome accession   NZ_CP095724
Coordinates   160137..161384 (+) Length   415 a.a.
NCBI ID   WP_247379608.1    Uniprot ID   -
Organism   Listeria innocua strain F6217     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 155137..166384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB348_RS00795 (AB348_00795) - 156301..157587 (+) 1287 WP_247379603.1 pitrilysin family protein -
  AB348_RS00800 (AB348_00800) - 157687..158418 (+) 732 WP_247379605.1 SDR family oxidoreductase -
  AB348_RS00805 (AB348_00805) - 158467..159402 (+) 936 WP_003762172.1 RodZ family helix-turn-helix domain-containing protein -
  AB348_RS00810 (AB348_00810) pgsA 159492..160070 (+) 579 WP_247379606.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB348_RS00815 (AB348_00815) cinA 160137..161384 (+) 1248 WP_247379608.1 competence/damage-inducible protein A Machinery gene
  AB348_RS00820 (AB348_00820) recA 161653..162699 (+) 1047 WP_003766841.1 recombinase RecA Machinery gene
  AB348_RS00825 (AB348_00825) rny 163000..164562 (+) 1563 WP_003721904.1 ribonuclease Y -
  AB348_RS00830 (AB348_00830) - 164678..165175 (+) 498 WP_247379610.1 GNAT family N-acetyltransferase -
  AB348_RS00835 (AB348_00835) - 165180..165983 (+) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  AB348_RS00840 (AB348_00840) - 166000..166362 (+) 363 WP_003762190.1 YlbF family regulator -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45599.77 Da        Isoelectric Point: 4.7417

>NTDB_id=677579 AB348_RS00815 WP_247379608.1 160137..161384(+) (cinA) [Listeria innocua strain F6217]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDAFHMNKITDYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSENAEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTKEEASALVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLEKNISISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QIIKENGVVSSECAKEMANNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=677579 AB348_RS00815 WP_247379608.1 160137..161384(+) (cinA) [Listeria innocua strain F6217]
ATGGCAAGCGCGGAAATTATTGCAGTAGGAACAGAATTATTACTAGGACAAATTGTAAACTCTAATGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTTTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTGA
TAGAAATTGCTGAAAAACGTAGTGATATTCTCATTTTTACGGGTGGCTTAGGTCCTACAGAAGACGATATTACGAAACAA
ATCCTAGCAGAACATCTACAAAAAAACTTAGTAGAAGATGCGTTTCATATGAACAAAATCACGGATTATTTTGCTTCAAG
AAATAGAACAATGACAGAAAATAATAAATTGCAAGCTGTAATTATTGAAGGATCTACTGTATTAAATAATGATTATGGTT
TTGCTGCAGGAATGTTCTTAAAAGAGAATAATCATACGTATATCTTACTTCCAGGTCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTTGTCAGCGAAAATGCTGAAAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGCATTGGAGAATCGCAATTAGCAGCAGATTTAAACGATATGATTTTAGCGCAAGTAAATCCAACTATTGCTACATATG
CAGGTGATAATGAAGTGGTTGTGCGGATTACTGCTACTGCAAAGACTAAAGAGGAAGCAAGTGCCCTTGTGAACGAAACA
GAACAAGAAATTTTACGCAGAGATGGAACTTTTTTATACGGTTATGGCGAGGTTTCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAAAAAAATATTTCTATTTCGGCTGCTGAAAGTTTTACCGCTGGATTATTCCAAGCAGAAATTGCCCGTTTTC
CTGGTATTTCTAAAATTTTTAAAGGTGGCATGGTCACATACAGCGAAGAAACGAAACAATCTATTCTTGAAGTCTCACCT
CAAATAATAAAAGAAAATGGAGTCGTAAGTTCAGAATGCGCGAAAGAAATGGCGAATAATGTCAGCAGACTTTGTAACAC
TGATATAGGTATTAGTTTTACTGGCGTTGCAGGTCCAGACAGTCTAGAAGGACATCCCGCAGGTACTATTTGGATAGGCT
TACATGTAGCTGGTTTTGAAACAGAAGCTTATCAGTTCGTTTATGGTAGGGATCGAAATCACAATCGCCGTCGTGCTGTA
AAACAAGGCTTTCAGTTGATTAAACAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.856

98.554

0.501
  cinA Streptococcus mitis SK321

48.325

100

0.487
  cinA Streptococcus pneumoniae TIGR4

47.857

100

0.484
  cinA Streptococcus mitis NCTC 12261

47.733

100

0.482
  cinA Streptococcus mutans UA159

48.077

100

0.482
  cinA Streptococcus pneumoniae Rx1

47.619

100

0.482
  cinA Streptococcus pneumoniae R6

47.619

100

0.482
  cinA Streptococcus pneumoniae D39

47.381

100

0.48
  cinA Streptococcus suis isolate S10

40.049

99.277

0.398