Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QMZ19_RS05225 Genome accession   NZ_CP095723
Coordinates   953373..954620 (+) Length   415 a.a.
NCBI ID   WP_160465713.1    Uniprot ID   -
Organism   Listeria innocua strain 2015L-6714     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 948373..959620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ19_RS05205 (MXK34_05210) - 949534..950820 (+) 1287 WP_247413103.1 pitrilysin family protein -
  QMZ19_RS05210 (MXK34_05215) - 950921..951652 (+) 732 WP_160465707.1 SDR family oxidoreductase -
  QMZ19_RS05215 (MXK34_05220) - 951702..952637 (+) 936 WP_160465709.1 RodZ family helix-turn-helix domain-containing protein -
  QMZ19_RS05220 (MXK34_05225) pgsA 952728..953306 (+) 579 WP_185311969.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QMZ19_RS05225 (MXK34_05230) cinA 953373..954620 (+) 1248 WP_160465713.1 competence/damage-inducible protein A Machinery gene
  QMZ19_RS05230 (MXK34_05235) recA 954889..955935 (+) 1047 WP_003766841.1 recombinase RecA Machinery gene
  QMZ19_RS05235 (MXK34_05240) rny 956236..957798 (+) 1563 WP_003721904.1 ribonuclease Y -
  QMZ19_RS05240 (MXK34_05245) - 957913..958410 (+) 498 WP_185311971.1 GNAT family N-acetyltransferase -
  QMZ19_RS05245 (MXK34_05250) - 958415..959218 (+) 804 WP_003762187.1 TIGR00282 family metallophosphoesterase -
  QMZ19_RS05250 (MXK34_05255) - 959235..959597 (+) 363 WP_003762190.1 YlbF family regulator -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45615.81 Da        Isoelectric Point: 4.7015

>NTDB_id=677543 QMZ19_RS05225 WP_160465713.1 953373..954620(+) (cinA) [Listeria innocua strain 2015L-6714]
MASAEIIAVGTELLLGQIVNSNAAFISEELAANGIYVYHHTVVGDNPKRLKDVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILAEHLQKNLVEDAFHMNKITEYFASRNRTMTENNKLQAVIIEGSTVLNNDYGFAAGMFLKENNHTYILLPGPPSEMKPM
FSSYAEPLLVSESAEKNVLESKIMRFFGIGESQLAADLNDMILAQVNPTIATYAGDNEVVVRITATAKTEEEASALVNET
EQEILRRDGTFLYGYGEVSLPELVTAMLLEKNITISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILEVSP
QIIKENGVVSSECAKEMAKNVSRLCNTDIGISFTGVAGPDSLEGHPAGTIWIGLHVAGFETEAYQFVYGRDRNHNRRRAV
KQGFQLIKQFLDTNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=677543 QMZ19_RS05225 WP_160465713.1 953373..954620(+) (cinA) [Listeria innocua strain 2015L-6714]
ATGGCAAGCGCGGAAATTATTGCAGTTGGAACAGAACTATTACTAGGACAAATTGTAAACTCTAACGCTGCTTTTATTTC
AGAAGAATTAGCAGCTAACGGGATTTATGTTTACCATCACACTGTCGTTGGTGACAACCCTAAACGTTTAAAAGATGTGA
TAGAAATTGCTGAAAAACGTAGCGATATTCTTATTTTTACCGGTGGATTAGGTCCTACAGAAGACGATATTACGAAACAA
ATTCTAGCAGAACATCTACAAAAAAACTTAGTAGAAGATGCGTTTCATATGAACAAAATCACGGAGTATTTTGCTTCAAG
AAATAGAACAATGACGGAAAATAACAAATTGCAAGCTGTAATTATTGAAGGATCTACTGTATTAAATAATGATTATGGTT
TTGCTGCAGGAATGTTCTTAAAAGAAAATAATCATACGTATATCTTACTTCCAGGTCCACCTTCAGAAATGAAACCGATG
TTTTCGAGTTATGCTGAACCTTTACTCGTCAGTGAAAGTGCTGAGAAAAATGTGTTAGAGTCTAAAATAATGCGCTTTTT
CGGTATTGGAGAATCGCAATTAGCAGCAGATTTAAACGATATGATTTTAGCTCAAGTCAATCCAACTATTGCTACATATG
CAGGTGATAATGAAGTAGTTGTGCGGATTACTGCTACTGCAAAGACTGAAGAGGAAGCAAGTGCTCTTGTAAACGAAACG
GAACAAGAAATTTTACGCAGAGATGGGACTTTTTTATACGGTTATGGCGAAGTTTCTTTACCAGAATTAGTAACAGCCAT
GCTGCTTGAGAAAAATATTACTATTTCCGCTGCTGAAAGTTTTACAGCTGGATTATTCCAAGCAGAAATTGCACGTTTTC
CTGGCATTTCTAAAATTTTTAAAGGTGGAATGGTTACATACAGCGAAGAGACAAAACAATCTATTCTTGAAGTCTCGCCT
CAAATAATAAAAGAAAATGGAGTCGTAAGTTCAGAATGCGCGAAAGAAATGGCGAAGAATGTCAGCAGACTTTGTAATAC
TGATATAGGTATTAGTTTTACTGGCGTTGCAGGCCCAGATAGCTTAGAAGGACATCCCGCAGGTACTATTTGGATAGGCT
TACATGTAGCTGGTTTTGAAACAGAAGCGTATCAGTTCGTTTATGGTAGAGATCGAAATCACAATCGTCGTCGTGCTGTA
AAACAAGGCTTTCAGTTGATTAAACAATTTTTAGATACAAATAAGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.554

0.506
  cinA Streptococcus mitis SK321

48.804

100

0.492
  cinA Streptococcus pneumoniae TIGR4

48.333

100

0.489
  cinA Streptococcus mutans UA159

48.558

100

0.487
  cinA Streptococcus mitis NCTC 12261

48.21

100

0.487
  cinA Streptococcus pneumoniae Rx1

48.095

100

0.487
  cinA Streptococcus pneumoniae R6

48.095

100

0.487
  cinA Streptococcus pneumoniae D39

47.857

100

0.484
  cinA Streptococcus suis isolate S10

40.534

99.277

0.402