NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG568_RS33005	Genome accession	NZ_CP109480
Coordinates	7413776..7414381 (+)	Length	201 a.a.
NCBI ID	WP_266421778.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01450
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 7408776..7419381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG568_RS32980 (OG568_33030)	-	7410300..7410494 (+)	195	WP_054231893.1	hypothetical protein	-
OG568_RS32985 (OG568_33035)	-	7410745..7411242 (-)	498	WP_329534181.1	DUF4265 domain-containing protein	-
OG568_RS33000 (OG568_33050)	tig	7411914..7413320 (+)	1407	WP_329534182.1	trigger factor	-
OG568_RS33005 (OG568_33055)	clpP	7413776..7414381 (+)	606	WP_266421778.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG568_RS33010 (OG568_33060)	clpP	7414519..7415199 (+)	681	WP_266624702.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG568_RS33015 (OG568_33065)	clpX	7415371..7416657 (+)	1287	WP_054231969.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG568_RS33020 (OG568_33070)	-	7416767..7417798 (-)	1032	WP_329534183.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21341.29 Da Isoelectric Point: 4.6747

                                >NTDB_id=677417 OG568_RS33005 WP_266421778.1 7413776..7414381(+) (clpP) [Streptomyces sp. NBC_01450]

MPTAAGEPFGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLASDPDKDIYLYINSPGGSITAGMAIYDTMQYI

KNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSFHTGQTVEQ

ITRDSDRDRWFDPIEAKEYGLIDDIMPTAAGMPGGGGTGAA

Nucleotide

Download Length: 606 bp

                                >NTDB_id=677417 OG568_RS33005 WP_266421778.1 7413776..7414381(+) (clpP) [Streptomyces sp. NBC_01450]

ATGCCCACAGCTGCCGGTGAACCCTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT

CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCTCCGACCCGGACA

AGGACATCTACCTCTACATCAACAGCCCCGGCGGATCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC

AAGAACGACGTGGTGACGATCGCCATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCGGGCACCCCCGGCAA

GCGCTTCGCCCTGCCGAACGCCGAGATTTTGATCCACCAGCCCTCGGCCGGCCTCGCGGGCTCCGCGTCGGACATCAAGA

TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTGACCTCCTTCCACACCGGTCAGACGGTCGAGCAG

ATCACTCGTGACTCGGACCGCGACCGTTGGTTCGACCCGATCGAGGCCAAGGAGTACGGCCTCATCGACGACATCATGCC

CACCGCTGCCGGTATGCCGGGCGGTGGCGGCACCGGGGCGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	55.615	93.035	0.517
clpP	Lactococcus lactis subsp. cremoris KW2	52.381	94.03	0.493
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	94.03	0.488
clpP	Streptococcus mutans UA159	51.852	94.03	0.488
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.598	86.567	0.473
clpP	Streptococcus pyogenes MGAS315	49.206	94.03	0.463
clpP	Streptococcus pyogenes JRS4	49.206	94.03	0.463
clpP	Streptococcus thermophilus LMG 18311	48.677	94.03	0.458
clpP	Streptococcus thermophilus LMD-9	48.677	94.03	0.458
clpP	Streptococcus pneumoniae Rx1	48.148	94.03	0.453
clpP	Streptococcus pneumoniae D39	48.148	94.03	0.453
clpP	Streptococcus pneumoniae R6	48.148	94.03	0.453
clpP	Streptococcus pneumoniae TIGR4	48.148	94.03	0.453

Detailed information NTG0677417