NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG595_RS28480	Genome accession	NZ_CP109479
Coordinates	6485312..6485920 (+)	Length	202 a.a.
NCBI ID	WP_329283272.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01451
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 6480312..6490920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG595_RS28450 (OG595_28425)	-	6480684..6481862 (+)	1179	WP_329276862.1	PP2C family protein-serine/threonine phosphatase	-
OG595_RS28455 (OG595_28430)	-	6481925..6482443 (+)	519	WP_329276864.1	HD domain-containing protein	-
OG595_RS28460 (OG595_28435)	-	6482649..6482843 (+)	195	WP_006383514.1	hypothetical protein	-
OG595_RS28475 (OG595_28450)	tig	6483446..6484858 (+)	1413	WP_329276866.1	trigger factor	-
OG595_RS28480 (OG595_28455)	clpP	6485312..6485920 (+)	609	WP_329283272.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG595_RS28485 (OG595_28460)	clpP	6485970..6486668 (+)	699	WP_329276868.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG595_RS28490 (OG595_28465)	clpX	6486852..6488138 (+)	1287	WP_329283274.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG595_RS28495 (OG595_28470)	-	6488324..6488602 (+)	279	WP_329276870.1	hypothetical protein	-
OG595_RS28500 (OG595_28475)	-	6488656..6489657 (-)	1002	WP_329276871.1	hypothetical protein	-

Sequence

Protein

Download Length: 202 a.a. Molecular weight: 21273.14 Da Isoelectric Point: 4.6747

                                >NTDB_id=677318 OG595_RS28480 WP_329283272.1 6485312..6485920(+) (clpP) [Streptomyces sp. NBC_01451]

MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIYDTMQ

FIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTV

EQVTRDSDRDRWFDPEEAKAYGLIDDVIATAAGIPGGGGTGV

Nucleotide

Download Length: 609 bp

                                >NTDB_id=677318 OG595_RS28480 WP_329283272.1 6485312..6485920(+) (clpP) [Streptomyces sp. NBC_01451]

ATGCCTTCCGCCGCCGGCGAGCCTTCCATCGGCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT

CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCGCAGCTGCTGCTCCTCGCCGCCGCTGACC

CGGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAG

TTCATCAAGAACGACGTGATGACCATCGCCATGGGTCTCGCGGCGTCCATGGGCCAGTTCCTGCTCAGCGCCGGTACGCC

CGGCAAGCGCTTCGCCCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTCGCGGGTTCGGCCTCGGACA

TCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCGCAGCACACGGGCCAGACCGTC

GAGCAGGTCACCCGGGACTCGGACCGCGACCGCTGGTTCGACCCCGAGGAGGCCAAGGCGTACGGCCTCATCGACGACGT

CATCGCCACGGCCGCAGGCATCCCGGGCGGCGGCGGCACAGGGGTGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	57.895	84.653	0.49
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.198	90.099	0.47
clpP	Lactococcus lactis subsp. cremoris KW2	51.63	91.089	0.47
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.087	91.089	0.465
clpP	Streptococcus mutans UA159	54.335	85.644	0.465
clpP	Streptococcus pyogenes JRS4	52.601	85.644	0.45
clpP	Streptococcus pyogenes MGAS315	52.601	85.644	0.45
clpP	Streptococcus pneumoniae TIGR4	50.575	86.139	0.436
clpP	Streptococcus pneumoniae D39	50.575	86.139	0.436
clpP	Streptococcus pneumoniae Rx1	50.575	86.139	0.436
clpP	Streptococcus pneumoniae R6	50.575	86.139	0.436
clpP	Streptococcus thermophilus LMG 18311	50.867	85.644	0.436
clpP	Streptococcus thermophilus LMD-9	50.867	85.644	0.436

Detailed information NTG0677318