Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG488_RS12745 Genome accession   NZ_CP109473
Coordinates   2868136..2868819 (-) Length   227 a.a.
NCBI ID   WP_329228840.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01460     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863136..2873819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG488_RS12735 (OG488_12730) - 2865605..2866609 (+) 1005 WP_329228836.1 hypothetical protein -
  OG488_RS12740 (OG488_12735) clpX 2866680..2867978 (-) 1299 WP_103516222.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG488_RS12745 (OG488_12740) clpP 2868136..2868819 (-) 684 WP_329228840.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG488_RS12750 (OG488_12745) - 2868887..2869492 (-) 606 WP_198959691.1 ATP-dependent Clp protease proteolytic subunit -
  OG488_RS12755 (OG488_12750) tig 2869791..2871188 (-) 1398 WP_329228842.1 trigger factor -
  OG488_RS12770 (OG488_12765) - 2871858..2872052 (-) 195 WP_069172794.1 hypothetical protein -
  OG488_RS12775 (OG488_12770) - 2872522..2873688 (+) 1167 WP_329228844.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24797.20 Da        Isoelectric Point: 4.9065

>NTDB_id=677049 OG488_RS12745 WP_329228840.1 2868136..2868819(-) (clpP) [Streptomyces sp. NBC_01460]
MVKTHMNNFSGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEQMLAKHSTTPLEKISEDIERDKILTADDALAYGLVDQIVSTRKTTAGASV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=677049 OG488_RS12745 WP_329228840.1 2868136..2868819(-) (clpP) [Streptomyces sp. NBC_01460]
ATGGTGAAGACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGTGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCGGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTCGAGCAGATGCTGGCCAAGCACTCGACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTTACCGCCGACGACGCACTCGCGTACGGTCTGGTGGACC
AGATTGTCTCCACCCGTAAGACCACCGCAGGCGCGTCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.819

0.396
  clpP Streptococcus thermophilus LMG 18311

44.33

85.463

0.379
  clpP Streptococcus thermophilus LMD-9

44.33

85.463

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

84.141

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.141

0.374
  clpP Streptococcus mutans UA159

43.299

85.463

0.37
  clpP Streptococcus pyogenes JRS4

43.299

85.463

0.37
  clpP Streptococcus pyogenes MGAS315

43.299

85.463

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37