Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG445_RS16685 Genome accession   NZ_CP109470
Coordinates   3883074..3883754 (-) Length   226 a.a.
NCBI ID   WP_168528110.1    Uniprot ID   A0ABW3XCY0
Organism   Streptomyces sp. NBC_01462     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3878074..3888754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG445_RS16675 (OG445_16685) - 3880569..3881546 (+) 978 WP_329526356.1 hypothetical protein -
  OG445_RS16680 (OG445_16690) clpX 3881627..3882913 (-) 1287 WP_054212896.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG445_RS16685 (OG445_16695) clpP 3883074..3883754 (-) 681 WP_168528110.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG445_RS16690 (OG445_16700) clpP 3883882..3884487 (-) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG445_RS16695 (OG445_16705) tig 3884984..3886381 (-) 1398 WP_329526357.1 trigger factor -
  OG445_RS16710 (OG445_16720) - 3887053..3887379 (-) 327 WP_329526358.1 hypothetical protein -
  OG445_RS16715 (OG445_16725) - 3887673..3887867 (-) 195 WP_054231893.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24955.41 Da        Isoelectric Point: 4.7225

>NTDB_id=676967 OG445_RS16685 WP_168528110.1 3883074..3883754(-) (clpP) [Streptomyces sp. NBC_01462]
MNDFPGSGLHARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=676967 OG445_RS16685 WP_168528110.1 3883074..3883754(-) (clpP) [Streptomyces sp. NBC_01462]
GTGAACGACTTCCCCGGCAGCGGCCTCCACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGTGTCA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAAATCGCGGCGAACGAGATCCTCCGGATGCGCGCGCAGCTCGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTGGCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGCAAGATGAACAATTCCGCGGTGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385