Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG707_RS11930 Genome accession   NZ_CP109467
Coordinates   2595028..2595633 (-) Length   201 a.a.
NCBI ID   WP_329127744.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01465     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2590028..2600633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG707_RS11910 (OG707_11920) - 2590944..2591756 (+) 813 WP_329117274.1 hypothetical protein -
  OG707_RS11915 (OG707_11925) - 2591773..2592747 (+) 975 WP_329117276.1 hypothetical protein -
  OG707_RS11920 (OG707_11930) clpX 2592827..2594119 (-) 1293 WP_329117277.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG707_RS11925 (OG707_11935) clpP 2594277..2594963 (-) 687 WP_329127742.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG707_RS11930 (OG707_11940) clpP 2595028..2595633 (-) 606 WP_329127744.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG707_RS11935 (OG707_11945) tig 2595878..2597269 (-) 1392 WP_329117279.1 trigger factor -
  OG707_RS11950 (OG707_11960) - 2597771..2597965 (-) 195 WP_329117281.1 hypothetical protein -
  OG707_RS11955 (OG707_11965) - 2598334..2599425 (+) 1092 WP_329117284.1 acyltransferase family protein -
  OG707_RS11960 (OG707_11970) - 2599454..2600281 (-) 828 WP_329117286.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21184.02 Da        Isoelectric Point: 4.5494

>NTDB_id=676868 OG707_RS11930 WP_329127744.1 2595028..2595633(-) (clpP) [Streptomyces sp. NBC_01465]
MPYAAGEPNFGGGLGDQVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAADPEKDIFLYINSPGGSVTAGMAVYDTMQY
IPNDVVTIGMGLAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAEQLLRTKKRMAEITARHSGQTME
AIIRDGDRDRWYTAEEAKAYGLIDEIITSASGVPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=676868 OG707_RS11930 WP_329127744.1 2595028..2595633(-) (clpP) [Streptomyces sp. NBC_01465]
ATGCCTTACGCCGCCGGCGAGCCCAACTTCGGTGGAGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT
CATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTCCTCCTCGCGGCAGACCCCG
AGAAGGACATCTTCCTGTACATCAACAGCCCCGGCGGCTCGGTGACGGCGGGCATGGCGGTCTACGACACCATGCAGTAC
ATCCCGAACGACGTGGTCACCATCGGCATGGGCCTCGCGGCCTCGATGGGCCAGTTCCTGCTCACCGGCGGCACCGCGGG
CAAGCGCTTCGCGCTCCCCAACACCGACATCCTGATGCACCAGGGTTCGGCCGGCCTCGGCGGCACCGCCTCGGACATCA
AGATCCAGGCCGAGCAGCTGCTGCGCACCAAGAAGCGCATGGCGGAGATCACCGCCCGTCACTCCGGCCAGACGATGGAA
GCGATCATCCGCGACGGTGACCGCGACCGCTGGTACACCGCCGAAGAGGCCAAGGCCTACGGCCTCATCGACGAGATCAT
CACCTCCGCCTCGGGCGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.381

94.03

0.493
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.215

95.025

0.468
  clpP Lactococcus lactis subsp. cremoris KW2

52.542

88.06

0.463
  clpP Streptococcus mutans UA159

53.179

86.07

0.458
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.977

88.06

0.458
  clpP Streptococcus pyogenes MGAS315

51.445

86.07

0.443
  clpP Streptococcus pyogenes JRS4

51.445

86.07

0.443
  clpP Streptococcus pneumoniae Rx1

49.718

88.06

0.438
  clpP Streptococcus pneumoniae D39

49.718

88.06

0.438
  clpP Streptococcus pneumoniae R6

49.718

88.06

0.438
  clpP Streptococcus pneumoniae TIGR4

49.718

88.06

0.438
  clpP Streptococcus thermophilus LMG 18311

50.286

87.065

0.438
  clpP Streptococcus thermophilus LMD-9

50.286

87.065

0.438