Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CB4_RS14810 Genome accession   NZ_AP017312
Coordinates   2939513..2940757 (-) Length   414 a.a.
NCBI ID   WP_096466528.1    Uniprot ID   A0A0U4WJY9
Organism   Aneurinibacillus soli strain CB4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2934513..2945757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CB4_RS14790 (CB4_02998) - 2935187..2935741 (+) 555 WP_096467767.1 biotin transporter BioY -
  CB4_RS14795 (CB4_02999) bioD 2935738..2936472 (+) 735 WP_096466525.1 dethiobiotin synthase -
  CB4_RS14800 (CB4_03000) bioA 2936483..2937862 (+) 1380 WP_096466526.1 adenosylmethionine--8-amino-7-oxononanoate transaminase -
  CB4_RS14805 (CB4_03001) - 2937926..2939512 (-) 1587 WP_096466527.1 DEAD/DEAH box helicase -
  CB4_RS14810 (CB4_03002) cinA 2939513..2940757 (-) 1245 WP_096466528.1 competence/damage-inducible protein A Machinery gene
  CB4_RS14815 (CB4_03003) pgsA 2940798..2941376 (-) 579 WP_096466529.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CB4_RS14820 (CB4_03004) rimO 2941377..2942750 (-) 1374 WP_096466530.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CB4_RS14825 - 2943080..2943373 (+) 294 WP_096466531.1 hypothetical protein -
  CB4_RS14830 (CB4_03005) - 2943459..2944316 (-) 858 WP_110546205.1 RodZ domain-containing protein -
  CB4_RS14835 (CB4_03006) - 2944345..2945142 (-) 798 WP_096466532.1 DUF3388 domain-containing protein -
  CB4_RS14840 (CB4_03007) - 2945292..2945546 (-) 255 WP_096466533.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44292.89 Da        Isoelectric Point: 5.0892

>NTDB_id=67684 CB4_RS14810 WP_096466528.1 2939513..2940757(-) (cinA) [Aneurinibacillus soli strain CB4]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEVGVGMYYHTVVGDNAERLYSVIEQALERSDLLLFSGGLGPTKDDLTKET
VARVVARPLVEDTGAMARIEKYFERRGIPMTENNRKQALVVEGSHVLPNDHGMAPGMAIEYNNKLIIMLPGPPRELYPMF
TEYGLPHILSCMNENVVVHSKVLRFFGIGESALEEELMDLIDSQTNPTIAPLAADAEVTIRLTARAADVAEAARMIKKVE
EQIEKRVGAYIYGYGSDSLASVLVQAVAERGETVAFAESVTGGLISQMVTSVPGSSVALRGSIICYTNQVKNDLLGVPNE
VLASEGAVSAEVARIMADEVRLRLGSTYGVSITGEAGPVAGENKPVGLVYIGVSGADGTRVMEVKLSGTRAGIQTRAAKH
ALFATLERIKKGGC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=67684 CB4_RS14810 WP_096466528.1 2939513..2940757(-) (cinA) [Aneurinibacillus soli strain CB4]
ATGAAAGCGGAAATTATCGCGGTAGGGACAGAGCTTTTGCTCGGACAGATTGCCAATACGAATGCCCAGTTTTTATCTCA
GAAGCTGGCGGAAGTTGGCGTTGGCATGTACTATCATACGGTTGTCGGCGATAATGCCGAACGACTGTACAGCGTAATTG
AGCAGGCGCTTGAGCGATCTGATTTACTATTGTTTTCCGGGGGACTCGGGCCAACAAAAGATGATCTTACGAAAGAAACC
GTGGCGCGTGTTGTCGCACGTCCATTGGTAGAAGATACAGGGGCTATGGCCCGAATCGAGAAGTATTTTGAGCGGCGCGG
CATTCCGATGACAGAAAACAATCGCAAGCAGGCGCTTGTTGTGGAAGGAAGCCACGTGTTGCCGAATGATCATGGCATGG
CGCCAGGCATGGCAATTGAGTACAACAACAAGCTCATTATCATGCTGCCAGGACCGCCGCGCGAGCTGTATCCGATGTTT
ACTGAATACGGGCTGCCGCACATTCTTTCCTGCATGAATGAAAATGTTGTCGTTCATTCGAAGGTGCTTCGCTTCTTTGG
AATTGGGGAATCCGCTCTCGAAGAAGAGTTGATGGACTTAATTGACAGCCAGACGAACCCGACGATTGCTCCGCTGGCAG
CGGATGCGGAAGTGACCATTCGCTTGACGGCCCGGGCTGCAGATGTGGCGGAAGCGGCTCGTATGATTAAAAAAGTGGAA
GAACAGATCGAGAAGCGGGTCGGAGCCTATATTTATGGTTATGGTAGCGATTCACTTGCATCTGTGCTTGTGCAGGCTGT
CGCGGAACGTGGGGAAACGGTAGCGTTCGCGGAAAGCGTAACCGGAGGACTCATAAGTCAGATGGTCACCTCTGTACCGG
GCAGCTCGGTTGCTTTGCGTGGAAGTATTATCTGCTATACCAATCAAGTAAAGAATGATCTGCTTGGTGTACCGAATGAG
GTACTTGCTTCAGAAGGTGCAGTCAGTGCAGAAGTGGCACGCATTATGGCAGATGAGGTGCGTTTGCGTTTGGGTAGTAC
ATATGGAGTTTCTATTACAGGTGAAGCAGGACCTGTTGCAGGAGAAAACAAACCGGTCGGGCTCGTATACATTGGCGTAA
GCGGTGCGGATGGCACACGGGTAATGGAAGTAAAGCTGTCTGGCACAAGGGCGGGCATTCAGACACGCGCAGCTAAACAT
GCTTTGTTTGCGACGCTTGAGCGAATAAAAAAGGGTGGTTGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-406)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U4WJY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.902

99.034

0.534
  cinA Streptococcus mutans UA159

44.963

98.309

0.442
  cinA Streptococcus mitis NCTC 12261

44.175

99.517

0.44
  cinA Streptococcus mitis SK321

43.932

99.517

0.437
  cinA Streptococcus pneumoniae TIGR4

43.932

99.517

0.437
  cinA Streptococcus pneumoniae Rx1

43.689

99.517

0.435
  cinA Streptococcus pneumoniae R6

43.689

99.517

0.435
  cinA Streptococcus pneumoniae D39

43.447

99.517

0.432
  cinA Streptococcus suis isolate S10

40.816

94.686

0.386

Multiple sequence alignment