Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIU81_RS24695 Genome accession   NZ_CP109460
Coordinates   5564963..5565565 (+) Length   200 a.a.
NCBI ID   WP_329155327.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01454     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5559963..5570565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIU81_RS24665 (OIU81_24710) - 5560217..5561377 (-) 1161 WP_329151334.1 acyltransferase family protein -
  OIU81_RS24670 (OIU81_24715) - 5561981..5562175 (+) 195 WP_030415520.1 hypothetical protein -
  OIU81_RS24675 (OIU81_24720) - 5562213..5562599 (-) 387 WP_329151335.1 arsenate reductase family protein -
  OIU81_RS24690 (OIU81_24735) tig 5563275..5564675 (+) 1401 WP_329151336.1 trigger factor -
  OIU81_RS24695 (OIU81_24740) clpP 5564963..5565565 (+) 603 WP_329155327.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIU81_RS24700 (OIU81_24745) clpP 5565631..5566308 (+) 678 WP_329155330.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIU81_RS24705 (OIU81_24750) clpX 5566478..5567761 (+) 1284 WP_329151337.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIU81_RS24710 (OIU81_24755) - 5567835..5568797 (-) 963 WP_329151338.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21061.91 Da        Isoelectric Point: 4.7892

>NTDB_id=676822 OIU81_RS24695 WP_329155327.1 5564963..5565565(+) (clpP) [Streptomyces sp. NBC_01454]
MPSAAAEPTFGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSISAGLAIYDTMQYI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVER
ITQDSDRDRWFSADEAKGYGLIDDVMTSAAGVPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=676822 OIU81_RS24695 WP_329155327.1 5564963..5565565(+) (clpP) [Streptomyces sp. NBC_01454]
ATGCCTTCCGCCGCCGCTGAGCCGACCTTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTTCTCCTCGCCGCGGACCCGGACA
AGGACATCTTCCTCTACATCAACTCCCCGGGCGGCTCGATCTCGGCCGGCTTGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTGACGATCGCGATGGGCCTCGCCGCTTCCATGGGCCAGTTCCTGCTGAGCGCCGGCACCCCGGGCAA
GCGCTTCGCGCTGCCGAATGCCGAGATCCTCATCCACCAGCCCTCCGCGGGCCTGGCGGGTTCCGCGTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGGATGGCGGAGCTCACGGCCTTCCACACCGGTCAGACCGTCGAGCGG
ATCACGCAGGACTCGGACCGCGACCGCTGGTTCTCCGCCGACGAGGCCAAGGGGTACGGCCTGATCGACGATGTGATGAC
CTCCGCCGCCGGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.723

94

0.505
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Lactococcus lactis subsp. cremoris KW2

50.785

95.5

0.485
  clpP Streptococcus mutans UA159

50.785

95.5

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.262

95.5

0.48
  clpP Streptococcus thermophilus LMG 18311

49.738

95.5

0.475
  clpP Streptococcus pyogenes JRS4

49.738

95.5

0.475
  clpP Streptococcus pyogenes MGAS315

49.738

95.5

0.475
  clpP Streptococcus thermophilus LMD-9

49.738

95.5

0.475
  clpP Streptococcus pneumoniae Rx1

48.691

95.5

0.465
  clpP Streptococcus pneumoniae D39

48.691

95.5

0.465
  clpP Streptococcus pneumoniae R6

48.691

95.5

0.465
  clpP Streptococcus pneumoniae TIGR4

48.691

95.5

0.465