Detailed information NTG0676824

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: OIU81_RS24705
• Genome accession: NZ_CP109460
• Coordinates: 5566478..5567761 (+)
• Length: 427 a.a.
• NCBI ID: WP_329151337.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01454
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5561478..5572761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIU81_RS24670 (OIU81_24715)	-	5561981..5562175 (+)	195	WP_030415520.1	hypothetical protein	-
OIU81_RS24675 (OIU81_24720)	-	5562213..5562599 (-)	387	WP_329151335.1	arsenate reductase family protein	-
OIU81_RS24690 (OIU81_24735)	tig	5563275..5564675 (+)	1401	WP_329151336.1	trigger factor	-
OIU81_RS24695 (OIU81_24740)	clpP	5564963..5565565 (+)	603	WP_329155327.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OIU81_RS24700 (OIU81_24745)	clpP	5565631..5566308 (+)	678	WP_329155330.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OIU81_RS24705 (OIU81_24750)	clpX	5566478..5567761 (+)	1284	WP_329151337.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OIU81_RS24710 (OIU81_24755)	-	5567835..5568797 (-)	963	WP_329151338.1	hypothetical protein	-
OIU81_RS24715 (OIU81_24760)	-	5568974..5571622 (+)	2649	WP_329151339.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46728.52 Da
• Isoelectric Point: 4.8277

>NTDB_id=676824 OIU81_RS24705 WP_329151337.1 5566478..5567761(+) (clpX) [Streptomyces sp. NBC_01454]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLNGYVVGQDP
AKKALSVAVYNHYKRVQAGENGPGRGEEGIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAFADATALTEAGYVGEDV
ENILLKLIQAADFDIKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI
DTTNVLFIVGGAFAGLEKIIESRSGAKGIGFGATIRSKREIESKDQLQDVMPEDLVKFGMIPEFIGRLPVLTSVHNLDRE
ALLQILVEPRNALVKQYKRLFELDGVELDFDRPALEAIADQAILRGTGARGLRAIMEEVLQAVMYEIPSRKDVARVVITE
DVVHSNVNPTLVPRNRGESGEPQEKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=676824 OIU81_RS24705 WP_329151337.1 5566478..5567761(+) (clpX) [Streptomyces sp. NBC_01454]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCATTCTGCGGAAAGAGTCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCTGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAAATCATCGAGGAGGAGCTCGCCGAGACCT
CCGAGGTGCGGTGGGAGGAACTCCCCAAGCCGCGGGAGATCTACGAGTTCCTGAACGGCTATGTCGTCGGCCAGGACCCC
GCCAAGAAGGCGCTGTCGGTCGCCGTCTACAACCACTACAAGCGGGTGCAGGCGGGCGAGAACGGCCCCGGCCGCGGCGA
GGAGGGCATCGAGCTCGCCAAGTCCAACATCCTGCTGCTGGGCCCCACCGGCTCCGGCAAGACGCTGCTCGCCCAGACCC
TCGCCCGGATGCTCAACGTCCCCTTCGCGTTCGCCGACGCCACGGCGCTCACGGAAGCCGGCTATGTCGGCGAGGACGTC
GAGAACATCCTCCTCAAGCTGATCCAGGCCGCGGACTTCGACATCAAGAAGGCCGAGACCGGCATCATCTACATCGACGA
GATCGACAAGGTCGCCCGGAAGAGCGAAAACCCGTCGATCACCCGCGATGTCTCCGGTGAGGGCGTCCAGCAGGCCCTGC
TGAAGATCCTGGAGGGCACCACCGCCTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCCCACCAGGAATTCATCCAGATC
GACACCACCAACGTCCTCTTCATCGTGGGCGGTGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCCCGGTCCGGTGCCAA
GGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGCGCGAGATCGAGTCCAAGGACCAGCTCCAGGACGTCATGCCGGAGG
ACCTGGTGAAGTTCGGGATGATCCCGGAGTTCATCGGCCGTCTCCCCGTCCTCACCTCGGTCCACAACCTCGACCGCGAG
GCCCTGCTGCAGATCCTGGTCGAGCCGCGCAACGCGCTCGTCAAGCAGTACAAGCGCCTCTTCGAACTCGACGGTGTCGA
GCTGGACTTCGACCGCCCGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTGCGCGGCACCGGCGCCCGTGGTCTGCGCG
CCATCATGGAGGAGGTCCTCCAGGCGGTGATGTACGAGATCCCGTCCCGCAAGGACGTGGCCCGCGTCGTCATCACCGAG
GACGTCGTCCACTCGAACGTGAACCCCACCCTGGTCCCGCGCAACCGCGGCGAGTCCGGGGAGCCGCAGGAGAAGAGCGC
CTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-394)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.594	93.911	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.171	96.019	0.511