Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIU91_RS28835 Genome accession   NZ_CP109455
Coordinates   6355177..6355854 (+) Length   225 a.a.
NCBI ID   WP_329155330.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01456     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6350177..6360854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIU91_RS28805 (OIU91_28835) - 6351527..6351721 (+) 195 WP_030415520.1 hypothetical protein -
  OIU91_RS28810 (OIU91_28840) - 6351759..6352145 (-) 387 WP_329151335.1 arsenate reductase family protein -
  OIU91_RS28825 (OIU91_28855) tig 6352821..6354221 (+) 1401 WP_329151336.1 trigger factor -
  OIU91_RS28830 (OIU91_28860) clpP 6354509..6355111 (+) 603 WP_329155327.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIU91_RS28835 (OIU91_28865) clpP 6355177..6355854 (+) 678 WP_329155330.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIU91_RS28840 (OIU91_28870) clpX 6356024..6357307 (+) 1284 WP_329151337.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIU91_RS28845 (OIU91_28875) - 6357381..6358343 (-) 963 WP_329151338.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24624.89 Da        Isoelectric Point: 4.5508

>NTDB_id=676757 OIU91_RS28835 WP_329155330.1 6355177..6355854(+) (clpP) [Streptomyces sp. NBC_01456]
MNYFPGSGLSQGAESEFSGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEDLLAKHSSTPIEKIRDDIERDKILTAEESLAYGLVDQIVSTRKSSVAIG

Nucleotide


Download         Length: 678 bp        

>NTDB_id=676757 OIU91_RS28835 WP_329155330.1 6355177..6355854(+) (clpP) [Streptomyces sp. NBC_01456]
ATGAACTACTTCCCCGGCAGCGGCCTCTCCCAGGGCGCGGAGTCCGAGTTTTCCGGCCCACGGGCCGAGTCCCGCTACAT
CGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGTGTGCGGGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGATGCCTCGGCCAACGACGTCATGGCCCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCCATCTACATCAACAGCCCCGGTGGTTCGTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCCGGCACGCCCG
GCAAGCGGATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGACAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCTCGCAGCTGGAGGACCTGCTGGCCAAGCACTCCTCCACGCCGAT
CGAGAAGATCCGTGACGATATCGAGCGTGACAAGATTCTGACGGCGGAGGAGTCCCTGGCGTACGGTCTGGTCGACCAGA
TCGTCTCGACCCGGAAGTCCTCCGTGGCGATCGGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

84.444

0.431
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.936

83.556

0.409
  clpP Streptococcus thermophilus LMD-9

45.361

86.222

0.391
  clpP Streptococcus pyogenes JRS4

45.361

86.222

0.391
  clpP Streptococcus pyogenes MGAS315

45.361

86.222

0.391
  clpP Streptococcus mutans UA159

45.361

86.222

0.391
  clpP Streptococcus thermophilus LMG 18311

45.361

86.222

0.391
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.889

0.387
  clpP Streptococcus pneumoniae Rx1

44.56

85.778

0.382
  clpP Streptococcus pneumoniae D39

44.56

85.778

0.382
  clpP Streptococcus pneumoniae R6

44.56

85.778

0.382
  clpP Streptococcus pneumoniae TIGR4

44.56

85.778

0.382
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

84.889

0.378