Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG352_RS14910 Genome accession   NZ_CP109435
Coordinates   3252795..3253400 (-) Length   201 a.a.
NCBI ID   WP_266409263.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01485     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247795..3258400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG352_RS14895 (OG352_14905) - 3249171..3250193 (+) 1023 WP_329217354.1 hypothetical protein -
  OG352_RS14900 (OG352_14910) clpX 3250322..3251611 (-) 1290 WP_329217356.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG352_RS14905 (OG352_14915) clpP 3251794..3252474 (-) 681 WP_329217358.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG352_RS14910 (OG352_14920) clpP 3252795..3253400 (-) 606 WP_266409263.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG352_RS14915 (OG352_14925) tig 3253816..3255207 (-) 1392 WP_329217360.1 trigger factor -
  OG352_RS14930 (OG352_14940) - 3255943..3256137 (-) 195 WP_329217362.1 hypothetical protein -
  OG352_RS14935 (OG352_14945) - 3256537..3257709 (+) 1173 WP_329217363.1 acyltransferase family protein -
  OG352_RS14940 (OG352_14950) - 3257706..3258188 (-) 483 WP_329217365.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21304.20 Da        Isoelectric Point: 4.6747

>NTDB_id=676145 OG352_RS14910 WP_266409263.1 3252795..3253400(-) (clpP) [Streptomyces sp. NBC_01485]
MPYAAGEPSIGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQFI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKRRMAELTSQHTGQTVEQ
VTRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGAA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=676145 OG352_RS14910 WP_266409263.1 3252795..3253400(-) (clpP) [Streptomyces sp. NBC_01485]
ATGCCCTACGCCGCCGGCGAGCCTTCCATCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGGCGGTCGACGACGACATCGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGATCCGGACA
AGGACATCTTCCTGTACATCAACAGCCCCGGCGGCTCGATCACCGCCGGTATGGCGATCTACGACACGATGCAGTTCATC
AAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCCTCGATGGGGCAGTTCCTGCTCAGCGCGGGCACCCCGGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGTCTGGCCGGCTCGGCCTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGCGCCGCATGGCGGAACTCACCTCGCAGCACACCGGCCAGACGGTCGAGCAG
GTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCATCCC
GACCGCGGCCGGCATGCCGGGCGGCGGCGGTACCGGGGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.08

93.035

0.512
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

94.527

0.488
  clpP Streptococcus mutans UA159

50.794

94.03

0.478
  clpP Lactococcus lactis subsp. cremoris KW2

50.265

94.03

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

49.735

94.03

0.468
  clpP Streptococcus pyogenes MGAS315

48.677

94.03

0.458
  clpP Streptococcus pyogenes JRS4

48.677

94.03

0.458
  clpP Streptococcus thermophilus LMG 18311

48.677

94.03

0.458
  clpP Streptococcus thermophilus LMD-9

48.677

94.03

0.458
  clpP Streptococcus pneumoniae Rx1

48.148

94.03

0.453
  clpP Streptococcus pneumoniae D39

48.148

94.03

0.453
  clpP Streptococcus pneumoniae R6

48.148

94.03

0.453
  clpP Streptococcus pneumoniae TIGR4

48.148

94.03

0.453