Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG310_RS23825 Genome accession   NZ_CP109427
Coordinates   5658569..5659243 (+) Length   224 a.a.
NCBI ID   WP_329457904.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01497     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5653569..5664243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG310_RS23800 (OG310_23805) - 5653753..5654898 (+) 1146 WP_329457902.1 tyrosine-type recombinase/integrase -
  OG310_RS23815 (OG310_23820) tig 5655579..5656997 (+) 1419 WP_329457903.1 trigger factor -
  OG310_RS23820 (OG310_23825) - 5657916..5658521 (+) 606 WP_329460340.1 ATP-dependent Clp protease proteolytic subunit -
  OG310_RS23825 (OG310_23830) clpP 5658569..5659243 (+) 675 WP_329457904.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG310_RS23830 (OG310_23835) clpX 5659455..5660747 (+) 1293 WP_329457905.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG310_RS23835 (OG310_23840) - 5660940..5662028 (-) 1089 WP_329457906.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24454.76 Da        Isoelectric Point: 4.5097

>NTDB_id=676100 OG310_RS23825 WP_329457904.1 5658569..5659243(+) (clpP) [Streptomyces sp. NBC_01497]
MVNTDMNNTSASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRLALPNARVLIHQPSSQTGREQLSDLE
IAANEILRMRTQLEEMLAKHSTTPIEKVRDDIERDKILTADDALAYGLVDQIVSTRKTTAAAAA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=676100 OG310_RS23825 WP_329457904.1 5658569..5659243(+) (clpP) [Streptomyces sp. NBC_01497]
ATGGTGAACACCGACATGAACAACACTTCCGCGAGCGGCCTGTACACGGGCCCGCAGGTGGACAACCGCTACGTCGTCCC
GCGTTTCGTCGAGCGCACCTCGCAGGGCGTCCGCGAGTACGACCCGTACGCCAAGCTCTTCGAAGAGCGCGTGATCTTCC
TCGGCGTGCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCCATGGACCCCGACCGT
GACATCTCCATCTACATCAACAGCCCCGGCGGCTCGATGACGGCCCTCACGGCCATCTACGACACGATGCAGTTCGTGAA
GCCGGACATCCAGACCGTGTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTGCTGCTCGCCGCCGGCACGCCGGGCAAGC
GGCTCGCGCTGCCCAACGCGCGGGTGTTGATCCACCAGCCGTCCAGCCAGACGGGCCGCGAGCAGCTCTCCGACCTGGAG
ATCGCGGCCAACGAGATCCTCCGTATGCGCACGCAGCTGGAGGAGATGCTGGCGAAGCACTCCACGACCCCGATCGAGAA
GGTCAGGGACGACATCGAGCGGGACAAGATCCTCACCGCCGATGACGCGCTCGCCTACGGTCTGGTCGACCAGATCGTTT
CCACCCGTAAGACCACGGCCGCCGCAGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

49.474

84.821

0.42
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

84.375

0.402
  clpP Streptococcus thermophilus LMD-9

45.361

86.607

0.393
  clpP Streptococcus thermophilus LMG 18311

45.361

86.607

0.393
  clpP Streptococcus pneumoniae D39

44.792

85.714

0.384
  clpP Streptococcus pneumoniae TIGR4

44.792

85.714

0.384
  clpP Streptococcus pneumoniae R6

44.792

85.714

0.384
  clpP Streptococcus pneumoniae Rx1

44.792

85.714

0.384
  clpP Streptococcus mutans UA159

44.737

84.821

0.379
  clpP Streptococcus pyogenes MGAS315

43.814

86.607

0.379
  clpP Streptococcus pyogenes JRS4

43.814

86.607

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

85.268

0.375
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

85.268

0.371