Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MUY23_RS10590 Genome accession   NZ_CP095162
Coordinates   2152690..2153871 (-) Length   393 a.a.
NCBI ID   WP_004194467.1    Uniprot ID   -
Organism   Streptococcus suis strain TJS75     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2147690..2158871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUY23_RS10550 rpsJ 2147931..2148239 (-) 309 WP_002939332.1 30S ribosomal protein S10 -
  MUY23_RS10555 comX/sigX 2148561..2148827 (-) 267 WP_002939335.1 hypothetical protein Regulator
  MUY23_RS10560 - 2148900..2149478 (-) 579 WP_044667815.1 nucleotidyltransferase family protein -
  MUY23_RS10565 - 2149736..2150056 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  MUY23_RS10570 ruvX 2150068..2150487 (-) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  MUY23_RS10575 - 2150487..2150753 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  MUY23_RS10580 spx 2150853..2151251 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  MUY23_RS10585 recA 2151487..2152638 (-) 1152 WP_011922545.1 recombinase RecA Machinery gene
  MUY23_RS10590 cinA 2152690..2153871 (-) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  MUY23_RS10595 - 2153908..2154477 (-) 570 WP_004194469.1 DNA-3-methyladenine glycosylase I -
  MUY23_RS10600 ruvA 2154731..2155321 (-) 591 WP_004194470.1 Holliday junction branch migration protein RuvA -
  MUY23_RS10605 mutL 2155360..2157297 (-) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL -
  MUY23_RS10610 - 2157499..2158788 (+) 1290 WP_002935134.1 IS4-like element ISSsu2 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43013.95 Da        Isoelectric Point: 4.4112

>NTDB_id=675859 MUY23_RS10590 WP_004194467.1 2152690..2153871(-) (cinA) [Streptococcus suis strain TJS75]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQI
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRILRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=675859 MUY23_RS10590 WP_004194467.1 2152690..2153871(-) (cinA) [Streptococcus suis strain TJS75]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTCTATTTCCACACAGCTGTTGGAGATAATGAACAGAGGCTTCTGTCTGTACTGG
AAGTAGCCCGTCAGCGGAGCGACCTGGTCATTCTCTGTGGAGGATTGGGTCCAACTGAGGATGACTTGACCAAGCAGATC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTATCCTACGTTTTTTTGGCATTGG
TGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATCGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTAAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

95.929

100

0.959
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Streptococcus pneumoniae R6

55.769

100

0.59
  cinA Streptococcus mitis SK321

55.769

100

0.59
  cinA Streptococcus pneumoniae TIGR4

55.769

100

0.59
  cinA Streptococcus pneumoniae Rx1

55.769

100

0.59
  cinA Streptococcus mitis NCTC 12261

55.529

100

0.588
  cinA Streptococcus pneumoniae D39

55.529

100

0.588
  cinA Bacillus subtilis subsp. subtilis str. 168

40.665

99.491

0.405