Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG422_RS09805 Genome accession   NZ_CP109397
Coordinates   2206105..2206782 (-) Length   225 a.a.
NCBI ID   WP_143940900.1    Uniprot ID   A0A553ZPS6
Organism   Streptomyces sp. NBC_01525     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201105..2211782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG422_RS09795 (OG422_09800) - 2203607..2204587 (+) 981 WP_405742018.1 hypothetical protein -
  OG422_RS09800 (OG422_09805) clpX 2204664..2205947 (-) 1284 WP_143940901.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG422_RS09805 (OG422_09810) clpP 2206105..2206782 (-) 678 WP_143940900.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG422_RS09810 (OG422_09815) clpP 2206849..2207451 (-) 603 WP_185993847.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG422_RS09815 (OG422_09820) tig 2207739..2209121 (-) 1383 WP_143940898.1 trigger factor -
  OG422_RS09830 (OG422_09835) - 2209792..2210178 (+) 387 WP_143940897.1 arsenate reductase family protein -
  OG422_RS09835 (OG422_09840) - 2210272..2210466 (-) 195 WP_143940896.1 hypothetical protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24641.94 Da        Isoelectric Point: 4.5019

>NTDB_id=675610 OG422_RS09805 WP_143940900.1 2206105..2206782(-) (clpP) [Streptomyces sp. NBC_01525]
MNNFPGSGLYQGAESEFSGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEELLAKHSSTPIEKIRDDIERDKILTAEETLAYGLVDEIVSTRKASVSMG

Nucleotide


Download         Length: 678 bp        

>NTDB_id=675610 OG422_RS09805 WP_143940900.1 2206105..2206782(-) (clpP) [Streptomyces sp. NBC_01525]
ATGAACAACTTCCCCGGCAGCGGCCTGTACCAGGGCGCCGAGTCCGAGTTTTCCGGCCCGCGCGCCGAGTCCCGCTACAT
CGTTCCGCGTTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCATCGGCCAATGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGATCCC
GACCGTGACATCTCGATCTACATCAACTCCCCGGGTGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCTCGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTGCTGCTCGCCGCCGGTACCCCCG
GCAAGCGGATGGCGCTGCCCAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTGCGGATGCGCGCGCAGCTCGAAGAACTGCTGGCCAAGCACTCCTCGACCCCGAT
CGAGAAGATCCGGGACGACATCGAGCGTGACAAGATCCTGACCGCCGAGGAGACCCTGGCGTACGGTCTGGTCGACGAGA
TCGTGTCGACGCGCAAGGCGTCGGTCTCGATGGGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553ZPS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.444

0.436
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

83.556

0.404
  clpP Streptococcus pyogenes MGAS315

46.842

84.444

0.396
  clpP Streptococcus pyogenes JRS4

46.842

84.444

0.396
  clpP Streptococcus thermophilus LMD-9

45.876

86.222

0.396
  clpP Streptococcus mutans UA159

45.876

86.222

0.396
  clpP Streptococcus thermophilus LMG 18311

45.876

86.222

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

46.073

84.889

0.391
  clpP Streptococcus pneumoniae Rx1

45.078

85.778

0.387
  clpP Streptococcus pneumoniae D39

45.078

85.778

0.387
  clpP Streptococcus pneumoniae R6

45.078

85.778

0.387
  clpP Streptococcus pneumoniae TIGR4

45.078

85.778

0.387
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.889

0.382