Detailed information
Bioinformatically predicted
Overview
| Name | cinA | Type | Machinery gene |
| Locus tag | MUB25_RS04235 | Genome accession | NZ_CP094952 |
| Coordinates | 890516..891757 (+) | Length | 413 a.a. |
| NCBI ID | WP_014569352.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus rhamnosus strain VHProbi F20 | ||
| Function | facilitate localization of RecA (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 882600..931487 | 890516..891757 | within | 0 |
Gene organization within MGE regions
Location: 882600..931487
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MUB25_RS04205 (MUB25_04195) | - | 883098..885398 (+) | 2301 | WP_014569347.1 | DNA translocase FtsK | - |
| MUB25_RS04210 (MUB25_04200) | yfmF | 885407..886669 (+) | 1263 | WP_014569348.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| MUB25_RS04215 (MUB25_04205) | yfmH | 886666..887958 (+) | 1293 | WP_014569349.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| MUB25_RS04220 (MUB25_04210) | ymfI | 887958..888686 (+) | 729 | WP_014569350.1 | elongation factor P 5-aminopentanone reductase | - |
| MUB25_RS04225 (MUB25_04215) | - | 888773..889708 (+) | 936 | WP_005688668.1 | helix-turn-helix domain-containing protein | - |
| MUB25_RS04230 (MUB25_04220) | pgsA | 889705..890295 (+) | 591 | WP_014569351.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| MUB25_RS04235 (MUB25_04225) | cinA | 890516..891757 (+) | 1242 | WP_014569352.1 | competence/damage-inducible protein A | Machinery gene |
| MUB25_RS04240 (MUB25_04230) | recA | 891809..892861 (+) | 1053 | WP_005688187.1 | recombinase RecA | Machinery gene |
| MUB25_RS04245 (MUB25_04235) | rny | 893486..895057 (+) | 1572 | WP_005684479.1 | ribonuclease Y | - |
| MUB25_RS04250 (MUB25_04240) | - | 895146..895802 (-) | 657 | WP_029943817.1 | YigZ family protein | - |
| MUB25_RS04255 (MUB25_04245) | - | 895830..897095 (+) | 1266 | WP_014569356.1 | DEAD/DEAH box helicase | - |
| MUB25_RS04260 (MUB25_04250) | - | 897254..897772 (+) | 519 | WP_005688681.1 | ComF family protein | - |
| MUB25_RS04265 (MUB25_04255) | hpf | 897964..898521 (+) | 558 | WP_005684485.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| MUB25_RS04270 (MUB25_04260) | secA | 899104..901467 (+) | 2364 | WP_005684487.1 | preprotein translocase subunit SecA | - |
| MUB25_RS04275 (MUB25_04265) | prfB | 901609..902725 (+) | 1117 | WP_154241369.1 | peptide chain release factor 2 | - |
| MUB25_RS04280 (MUB25_04270) | ftsE | 902802..903488 (+) | 687 | WP_005684489.1 | cell division ATP-binding protein FtsE | - |
| MUB25_RS04285 (MUB25_04275) | ftsX | 903478..904365 (+) | 888 | WP_005684490.1 | permease-like cell division protein FtsX | - |
| MUB25_RS04290 (MUB25_04280) | - | 904443..904580 (+) | 138 | WP_014569359.1 | hypothetical protein | - |
| MUB25_RS04295 (MUB25_04285) | - | 904636..905733 (+) | 1098 | WP_014569360.1 | PDZ domain-containing protein | - |
| MUB25_RS04300 (MUB25_04290) | - | 905730..906434 (+) | 705 | WP_005688690.1 | response regulator transcription factor | - |
| MUB25_RS04305 (MUB25_04295) | pnpS | 906427..908094 (+) | 1668 | WP_014569361.1 | two-component system histidine kinase PnpS | - |
| MUB25_RS04310 (MUB25_04300) | - | 908184..909050 (+) | 867 | WP_005684496.1 | phosphate ABC transporter substrate-binding protein PstS family protein | - |
| MUB25_RS04315 (MUB25_04305) | pstC | 909198..910121 (+) | 924 | WP_005684497.1 | phosphate ABC transporter permease subunit PstC | - |
| MUB25_RS04320 (MUB25_04310) | pstA | 910118..911002 (+) | 885 | WP_005684499.1 | phosphate ABC transporter permease PstA | - |
| MUB25_RS04325 (MUB25_04315) | pstB | 911073..911891 (+) | 819 | WP_005713669.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| MUB25_RS04330 (MUB25_04320) | pstB | 911901..912665 (+) | 765 | WP_005684501.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| MUB25_RS04335 (MUB25_04325) | phoU | 912676..913353 (+) | 678 | WP_005684502.1 | phosphate signaling complex protein PhoU | - |
| MUB25_RS04340 (MUB25_04330) | - | 913607..914485 (-) | 879 | WP_048653158.1 | IS3 family transposase | - |
| MUB25_RS04345 (MUB25_04335) | - | 914482..915210 (-) | 729 | WP_014569363.1 | helix-turn-helix domain-containing protein | - |
| MUB25_RS04350 (MUB25_04340) | liaX | 915779..917269 (+) | 1491 | WP_014569364.1 | daptomycin-sensing surface protein LiaX | - |
| MUB25_RS04355 (MUB25_04345) | - | 917281..917541 (+) | 261 | WP_005688700.1 | hypothetical protein | - |
| MUB25_RS04360 (MUB25_04350) | - | 917544..917879 (+) | 336 | WP_005684507.1 | phage holin family protein | - |
| MUB25_RS04365 (MUB25_04355) | hprK | 918146..919105 (+) | 960 | WP_005684508.1 | HPr(Ser) kinase/phosphatase | - |
| MUB25_RS04370 (MUB25_04360) | lgt | 919107..919934 (+) | 828 | WP_014569365.1 | prolipoprotein diacylglyceryl transferase | - |
| MUB25_RS04375 (MUB25_04365) | - | 919945..921000 (+) | 1056 | WP_014569366.1 | NAD(P)H-dependent glycerol-3-phosphate dehydrogenase | - |
| MUB25_RS04380 (MUB25_04370) | trxB | 921066..922013 (+) | 948 | WP_005684511.1 | thioredoxin-disulfide reductase | - |
| MUB25_RS04385 (MUB25_04375) | - | 922265..923992 (+) | 1728 | WP_014569367.1 | phospho-sugar mutase | - |
| MUB25_RS04390 (MUB25_04380) | - | 924247..924399 (-) | 153 | WP_225357597.1 | hypothetical protein | - |
| MUB25_RS04395 (MUB25_04385) | - | 924452..925099 (+) | 648 | WP_014569368.1 | YfbR-like 5'-deoxynucleotidase | - |
| MUB25_RS04400 (MUB25_04390) | uvrB | 925370..927385 (+) | 2016 | WP_005688715.1 | excinuclease ABC subunit UvrB | - |
| MUB25_RS04405 (MUB25_04395) | uvrA | 927566..930460 (+) | 2895 | WP_014569369.1 | excinuclease ABC subunit UvrA | - |
| MUB25_RS04410 (MUB25_04400) | - | 930662..931201 (+) | 540 | WP_014569370.1 | HdeD family acid-resistance protein | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 44472.12 Da Isoelectric Point: 7.2504
>NTDB_id=674507 MUB25_RS04235 WP_014569352.1 890516..891757(+) (cinA) [Lacticaseibacillus rhamnosus strain VHProbi F20]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAARVKQQQRPMTPNNRLQAMYPQGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGIGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLSEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE
Nucleotide
Download Length: 1242 bp
>NTDB_id=674507 MUB25_RS04235 WP_014569352.1 890516..891757(+) (cinA) [Lacticaseibacillus rhamnosus strain VHProbi F20]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCGAGCTATCATCAACAGGTTGTTGGGGATAATGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGTGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCCTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATTGATGCC
CGTCAGCTATCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATTACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCGAGCTATCATCAACAGGTTGTTGGGGATAATGCAAAACGACTGGCTGACGCGATAA
GTTTGGCGGAACAACGCAGTGATATCGTTATTTTGATTGGTGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGACGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCCTGCAAGCGATGTATCCCCAAGGCGCAATCGTATTGGCCAATCGTGTCGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCGATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TATCGGCGAATCGCAACTTGTGACAGACTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCGAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGTCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCCCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGTCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATTGATGCC
CGTCAGCTATCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCGGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cinA | Streptococcus mitis SK321 |
52.019 |
100 |
0.53 |
| cinA | Streptococcus mitis NCTC 12261 |
52.019 |
100 |
0.53 |
| cinA | Streptococcus pneumoniae TIGR4 |
51.544 |
100 |
0.525 |
| cinA | Streptococcus pneumoniae R6 |
51.069 |
100 |
0.521 |
| cinA | Streptococcus pneumoniae Rx1 |
51.069 |
100 |
0.521 |
| cinA | Streptococcus mutans UA159 |
51.442 |
100 |
0.518 |
| cinA | Streptococcus pneumoniae D39 |
50.831 |
100 |
0.518 |
| cinA | Bacillus subtilis subsp. subtilis str. 168 |
44.66 |
99.758 |
0.446 |
| cinA | Streptococcus suis isolate S10 |
42.593 |
91.525 |
0.39 |