Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG846_RS10395 Genome accession   NZ_CP109314
Coordinates   2245838..2246503 (-) Length   221 a.a.
NCBI ID   WP_161145967.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01601     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2240838..2251503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG846_RS10385 (OG846_10395) - 2243251..2244318 (+) 1068 WP_329011160.1 hypothetical protein -
  OG846_RS10390 (OG846_10400) clpX 2244381..2245667 (-) 1287 WP_217465538.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG846_RS10395 (OG846_10405) clpP 2245838..2246503 (-) 666 WP_161145967.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG846_RS10400 (OG846_10410) clpP 2246574..2247179 (-) 606 WP_202494535.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG846_RS10405 (OG846_10415) tig 2247435..2248808 (-) 1374 WP_329011161.1 trigger factor -
  OG846_RS10420 (OG846_10430) - 2249402..2249596 (-) 195 WP_161145964.1 hypothetical protein -
  OG846_RS10425 (OG846_10435) - 2250039..2251241 (+) 1203 WP_329011163.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24530.94 Da        Isoelectric Point: 4.5730

>NTDB_id=674014 OG846_RS10395 WP_161145967.1 2245838..2246503(-) (clpP) [Streptomyces sp. NBC_01601]
MSNFPGAASGMYEGPRPDSRYIIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDIS
IYINSPGGDMTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNSRVLIHQPAGSTGRGQLSDLEIIA
KEFTRMRDQLEDMLAKHSNQPLDKIREDIERDKILTAEEALEYGLVDQIISTRKMNNEAVR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=674014 OG846_RS10395 WP_161145967.1 2245838..2246503(-) (clpP) [Streptomyces sp. NBC_01601]
ATGAGCAACTTCCCCGGCGCCGCCAGCGGCATGTACGAGGGCCCCCGCCCCGACAGCCGTTACATCATCCCGCGCTTCGT
CGAACGCACTTCCCAGGGCGTCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTGGGCGTCC
AGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTCTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCG
ATCTACATCAACAGCCCCGGCGGTGACATGACGGCCCTGACGGCCATCTACGACACCATGCAGTTCGTGAAGCCCGACAT
CCAGACGGTGTGCATGGGCCAGGCCGCCTCGGCCGCGGCCATCCTGCTCGCCGCGGGCACCCCCGGCAAGCGCATGGCGC
TGCCGAACTCGCGCGTGCTGATCCACCAGCCGGCGGGCTCCACCGGGCGCGGTCAGCTCTCCGACCTGGAGATCATCGCC
AAGGAGTTCACCCGGATGCGCGACCAGCTCGAGGACATGCTGGCCAAGCACTCCAACCAGCCGCTGGACAAGATCCGCGA
GGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGGCGCTGGAGTACGGTCTGGTCGACCAGATCATCTCCACCCGCA
AGATGAACAACGAAGCGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(32-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

85.973

0.457
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.323

85.52

0.439
  clpP Streptococcus mutans UA159

44.444

89.593

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

88.688

0.394
  clpP Streptococcus thermophilus LMD-9

44.615

88.235

0.394
  clpP Streptococcus thermophilus LMG 18311

44.615

88.235

0.394
  clpP Streptococcus pyogenes MGAS315

43.434

89.593

0.389
  clpP Streptococcus pyogenes JRS4

43.434

89.593

0.389
  clpP Streptococcus pneumoniae R6

43.367

88.688

0.385
  clpP Streptococcus pneumoniae Rx1

43.367

88.688

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

88.688

0.385
  clpP Streptococcus pneumoniae TIGR4

43.367

88.688

0.385
  clpP Streptococcus pneumoniae D39

43.367

88.688

0.385