Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OH767_RS32350 Genome accession   NZ_CP109302
Coordinates   7111540..7112160 (+) Length   206 a.a.
NCBI ID   WP_406416160.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01614     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7106540..7117160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH767_RS32320 (OH767_32205) - 7107764..7107958 (+) 195 WP_030044846.1 hypothetical protein -
  OH767_RS32325 (OH767_32210) - 7108060..7108566 (+) 507 Protein_6397 protein kinase domain-containing protein -
  OH767_RS32330 (OH767_32215) - 7108699..7109043 (+) 345 WP_406416156.1 hypothetical protein -
  OH767_RS32345 (OH767_32230) tig 7109868..7111262 (+) 1395 WP_406416158.1 trigger factor -
  OH767_RS32350 (OH767_32235) clpP 7111540..7112160 (+) 621 WP_406416160.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH767_RS32355 (OH767_32240) clpP 7112231..7112911 (+) 681 WP_406202814.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH767_RS32360 (OH767_32245) clpX 7113092..7114378 (+) 1287 WP_406202816.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OH767_RS32365 (OH767_32250) - 7114456..7115439 (-) 984 WP_406416163.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21732.70 Da        Isoelectric Point: 4.6747

>NTDB_id=673653 OH767_RS32350 WP_406416160.1 7111540..7112160(+) (clpP) [Streptomyces sp. NBC_01614]
MTNLMPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAAADPDKDINLYINSPGGSITAGMAIY
DTMQFIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHT
GQSVEQVTRDSDRDRWFDPEEAKAYGLIDDVITTAAGIPGGGGTGV

Nucleotide


Download         Length: 621 bp        

>NTDB_id=673653 OH767_RS32350 WP_406416160.1 7111540..7112160(+) (clpP) [Streptomyces sp. NBC_01614]
GTGACGAATCTGATGCCCTCAGCCGCCGGCGAGCCTTCTATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCT
CAACGAGCGGATCATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTG
CCGCCGCGGACCCCGACAAGGACATCAACCTCTACATCAACAGCCCGGGCGGCTCGATCACGGCCGGCATGGCGATCTAC
GACACCATGCAGTTCATCAAGAACGACGTGATGACCATCGCCATGGGCCTCGCGGCGTCCATGGGCCAGTTCCTGCTCAG
CGCGGGCACCCCGGGCAAGCGGTTCGCCCTTCCGAACGCCGAGATCCTGATCCACCAGCCTTCCGCCGGCCTCGCCGGTT
CGGCGTCGGACATCAAGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGGCCCAGCACACC
GGCCAGTCGGTCGAGCAGGTCACCCGTGATTCGGACCGAGACCGCTGGTTCGACCCCGAGGAGGCCAAGGCGTACGGCCT
CATCGACGACGTCATCACCACAGCTGCCGGCATCCCGGGCGGCGGCGGCACCGGGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.497

92.718

0.515
  clpP Lactococcus lactis subsp. cremoris KW2

51.546

94.175

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.031

94.175

0.481
  clpP Streptococcus mutans UA159

50

93.204

0.466
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.747

88.35

0.466
  clpP Streptococcus pyogenes MGAS315

49.738

92.718

0.461
  clpP Streptococcus pyogenes JRS4

49.738

92.718

0.461
  clpP Streptococcus thermophilus LMG 18311

51.724

84.466

0.437
  clpP Streptococcus thermophilus LMD-9

51.724

84.466

0.437
  clpP Streptococcus pneumoniae Rx1

51.445

83.981

0.432
  clpP Streptococcus pneumoniae D39

51.445

83.981

0.432
  clpP Streptococcus pneumoniae R6

51.445

83.981

0.432
  clpP Streptococcus pneumoniae TIGR4

51.445

83.981

0.432