Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA60_RS06845 Genome accession   NZ_CP094824
Coordinates   1326558..1328948 (+) Length   796 a.a.
NCBI ID   WP_262650378.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6216     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1321558..1333948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA60_RS15450 sal(A) 1321860..1323485 (+) 1626 Protein_1337 ABC-F type ribosomal protection protein Sal(A) -
  MUA60_RS06830 (MUA60_06820) - 1323550..1324698 (+) 1149 WP_262650372.1 cysteine desulfurase family protein -
  MUA60_RS06835 (MUA60_06825) mnmA 1324691..1325800 (+) 1110 WP_262650374.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA60_RS06840 (MUA60_06830) - 1325887..1326555 (+) 669 WP_262650376.1 tetratricopeptide repeat protein -
  MUA60_RS06845 (MUA60_06835) recD2 1326558..1328948 (+) 2391 WP_262650378.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA60_RS06850 (MUA60_06840) alaS 1329198..1331828 (+) 2631 WP_262650380.1 alanine--tRNA ligase -
  MUA60_RS06855 (MUA60_06845) - 1331896..1332165 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  MUA60_RS06860 (MUA60_06850) ruvX 1332158..1332586 (+) 429 WP_262650381.1 Holliday junction resolvase RuvX -
  MUA60_RS06865 (MUA60_06855) - 1332606..1332911 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90477.71 Da        Isoelectric Point: 4.6175

>NTDB_id=673443 MUA60_RS06845 WP_262650378.1 1326558..1328948(+) (recD2) [Mammaliicoccus sciuri strain IVB6216]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIADQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTRLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDAWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVEEDTVSETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=673443 MUA60_RS06845 WP_262650378.1 1326558..1328948(+) (recD2) [Mammaliicoccus sciuri strain IVB6216]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTTAAAGGTAAAGTGACAAACCATCCGAAATACGGTAAACAACTACAAGCCGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATCCATTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAAACAGCAGAAACAATAGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCCGATGTCCTTAAAG
AAATACCTAAACTCAACAAGCAAAAAAGAGATACAATTGCAGAATCAATACGTGAGAATCAAGCTATTGAACGTATTATG
ATTAAACTTAATGAACTTGGTTTCGGACCTAAACTTGCGATGGCGATTTATCAATTTTATAAAGAAGAAACACTTAATAT
AATTAAACAATCTCCTTATCGTTTAGTGATGGATATAAATGGTATAGGTTTTCAAAGAGCTGACCAAATAGCTGATCAAG
TTGGGATTTCTAAAGATCATCATGATCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAACAATCATTACAGAATGGT
CATACATTTTTACCTGTTGATATTTTGGTCAACGGGGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATTAATGGTGTCATTATAGAAATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGGCTTTATCAACATCAAGATGAGCTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACACATTGGCCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCGTT
AGAAACAGCTATTAATCACAAAATGATGCTATTAACAGGTGGACCTGGAACAGGTAAGACGACCGTTATTCGAGGTATTT
GTGAGTTGTATTCTGAAATACATGGTGTAAGTTTGAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTGTTA
GCAGCACCGACTGGTCGTGCAGCAAAGCGTTTAAGTGAATCAACTCGACTAGAAGCAATGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACACAACCGGATGATGTGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATGCATGGTTAATGTATCAATTTTTAAGAGCAGTCCCTGATTATGCCCAAATCATATTTGTAGGTGATGAAGAT
CAATTACCATCAGTTGGACCAGGTCAGATTTTTAAAGATTTGATTGATTCTAAAGTTATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGACTTGGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGATCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTTCAAGGTGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCCCCTATATATCGTGGACCAGCTGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTCCTTCAATATGGTGATATTGAATATCGTGAAA
ATGATAAAGTACTACAACTTATTAATCGGCCAGATGATAATGTGTTTAATGGTGATATTGGTGTAGTGACGGGTGTTTAT
AAAGCAGAAGAAAATGCACTCGGTAAAGATGTCGTCATTGTGGATTATGAAGGGAATGACATTACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCCCAAGGGTCGGAATTCCCGATAGTCATTATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAATATTCTATATACCGGACTTACACGTGCGAAACAGTCGCTTGTTGTG
TGTGGTGAAGAGCAAGCCTTTAATCAAGGTATTCAAACGCTAGGTCATGAGAGAATGACTTCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAAGAAGATACGGTGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATAGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.751

100

0.503