Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OH735_RS12000 Genome accession   NZ_CP109297
Coordinates   2546915..2547595 (-) Length   226 a.a.
NCBI ID   WP_383756184.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01618     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2541915..2552595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH735_RS11990 (OH735_11965) - 2544378..2545376 (+) 999 WP_406381363.1 hypothetical protein -
  OH735_RS11995 (OH735_11970) clpX 2545459..2546757 (-) 1299 WP_406381365.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OH735_RS12000 (OH735_11975) clpP 2546915..2547595 (-) 681 WP_383756184.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OH735_RS12005 (OH735_11980) - 2547677..2548285 (-) 609 WP_406386533.1 ATP-dependent Clp protease proteolytic subunit -
  OH735_RS12010 (OH735_11985) tig 2548550..2549965 (-) 1416 WP_406381368.1 trigger factor -
  OH735_RS12025 (OH735_12000) - 2550585..2550779 (-) 195 WP_389990756.1 hypothetical protein -
  OH735_RS12030 (OH735_12005) - 2551259..2552413 (+) 1155 WP_406381370.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24753.15 Da        Isoelectric Point: 4.6883

>NTDB_id=673372 OH735_RS12000 WP_383756184.1 2546915..2547595(-) (clpP) [Streptomyces sp. NBC_01618]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKIRDDIERDKILTAEEALAYGLVDQIVSTRKSAATAA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=673372 OH735_RS12000 WP_383756184.1 2546915..2547595(-) (clpP) [Streptomyces sp. NBC_01618]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGATA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGTACGC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGTGTACTGATCCACCAGCCGTCCTCGCAGACCGGCCGGGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACTCC
GCTGGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAAGCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGAGCGCGGCCACGGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

83.628

0.407
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

84.513

0.385
  clpP Streptococcus thermophilus LMG 18311

44.845

85.841

0.385
  clpP Streptococcus thermophilus LMD-9

44.845

85.841

0.385
  clpP Streptococcus pyogenes JRS4

45.789

84.071

0.385
  clpP Streptococcus pyogenes MGAS315

45.789

84.071

0.385
  clpP Streptococcus pneumoniae Rx1

44.792

84.956

0.381
  clpP Streptococcus pneumoniae D39

44.792

84.956

0.381
  clpP Streptococcus pneumoniae R6

44.792

84.956

0.381
  clpP Streptococcus pneumoniae TIGR4

44.792

84.956

0.381
  clpP Streptococcus mutans UA159

45.263

84.071

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

45.026

84.513

0.381