Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OIE71_RS10615 Genome accession   NZ_CP109167
Coordinates   2379270..2379953 (-) Length   227 a.a.
NCBI ID   WP_329033063.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01725     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374270..2384953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE71_RS10605 (OIE71_10610) - 2376789..2377745 (+) 957 WP_329033062.1 hypothetical protein -
  OIE71_RS10610 (OIE71_10615) clpX 2377824..2379116 (-) 1293 WP_078077342.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OIE71_RS10615 (OIE71_10620) clpP 2379270..2379953 (-) 684 WP_329033063.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE71_RS10620 (OIE71_10625) clpP 2380007..2380612 (-) 606 WP_031231653.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OIE71_RS10625 (OIE71_10630) tig 2380868..2382283 (-) 1416 WP_329033065.1 trigger factor -
  OIE71_RS10640 (OIE71_10645) - 2382874..2383068 (-) 195 WP_147875291.1 hypothetical protein -
  OIE71_RS10645 (OIE71_10650) - 2383528..2384727 (+) 1200 WP_329033066.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24708.06 Da        Isoelectric Point: 4.6747

>NTDB_id=671795 OIE71_RS10615 WP_329033063.1 2379270..2379953(-) (clpP) [Streptomyces sp. NBC_01725]
MVNTHMNNYPGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTAGKRLALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRAQLEDMLAKHSTTPIEKVRDDIERDKILTAEDALAYGLVDQIVSTRKTTAAAAA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=671795 OIE71_RS10615 WP_329033063.1 2379270..2379953(-) (clpP) [Streptomyces sp. NBC_01725]
ATGGTGAACACCCATATGAACAACTACCCCGGCGCCTCTGCGAGCGGCCTCTACACCGGCCCTCAGGTGGACAACCGCTA
TGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCG
TGATCTTCCTCGGTGTCCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCCATGGAC
CCCGACCGTGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGATGACGGCCCTCACGGCCATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGACAGGCCGCCTCCGCGGCGGCGGTCCTGCTCGCGGCCGGCACGG
CGGGCAAGCGCCTGGCCCTGCCGAACGCGCGCGTCCTGATCCACCAGCCGTCCAGCCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGCGCGCAGCTCGAGGACATGCTGGCCAAGCACTCGACGACGCC
GATCGAGAAGGTCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCTCTGGCGTACGGTCTGGTCGACC
AGATCGTCTCGACCCGTAAGACCACGGCGGCGGCAGCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.819

0.396
  clpP Streptococcus thermophilus LMD-9

45.361

85.463

0.388
  clpP Streptococcus thermophilus LMG 18311

45.361

85.463

0.388
  clpP Streptococcus pneumoniae R6

44.792

84.581

0.379
  clpP Streptococcus pneumoniae D39

44.792

84.581

0.379
  clpP Streptococcus pneumoniae TIGR4

44.792

84.581

0.379
  clpP Streptococcus pneumoniae Rx1

44.792

84.581

0.379
  clpP Streptococcus pyogenes MGAS315

44.33

85.463

0.379
  clpP Streptococcus pyogenes JRS4

44.33

85.463

0.379
  clpP Streptococcus mutans UA159

44.737

83.7

0.374
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.141

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.141

0.366