Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MUA62_RS07915 Genome accession   NZ_CP094743
Coordinates   1636858..1637304 (-) Length   148 a.a.
NCBI ID   WP_072357807.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6252     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631858..1642304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA62_RS07885 (MUA62_07885) gcvPA 1632784..1634130 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA62_RS07890 (MUA62_07890) gcvT 1634150..1635241 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA62_RS07895 (MUA62_07895) - 1635400..1635924 (-) 525 WP_001015120.1 shikimate kinase -
  MUA62_RS07900 (MUA62_07900) - 1635914..1636060 (-) 147 WP_001789879.1 hypothetical protein -
  MUA62_RS07905 (MUA62_07905) comGF 1636157..1636654 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA62_RS07910 (MUA62_07910) comGE 1636572..1636871 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA62_RS07915 (MUA62_07915) comGD 1636858..1637304 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA62_RS07920 (MUA62_07920) comGC 1637282..1637593 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA62_RS07925 (MUA62_07925) comGB 1637607..1638677 (-) 1071 Protein_1558 competence type IV pilus assembly protein ComGB -
  MUA62_RS07930 (MUA62_07930) comGA 1638649..1639623 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA62_RS07935 (MUA62_07935) - 1639675..1640298 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA62_RS07940 (MUA62_07940) - 1640295..1640624 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA62_RS07945 (MUA62_07945) - 1640624..1641610 (-) 987 WP_000161315.1 ROK family glucokinase -
  MUA62_RS07950 (MUA62_07950) - 1641607..1641810 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=671794 MUA62_RS07915 WP_072357807.1 1636858..1637304(-) (comGD) [Staphylococcus aureus strain IVB6252]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=671794 MUA62_RS07915 WP_072357807.1 1636858..1637304(-) (comGD) [Staphylococcus aureus strain IVB6252]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986