Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MUA62_RS07905 Genome accession   NZ_CP094743
Coordinates   1636157..1636654 (-) Length   165 a.a.
NCBI ID   WP_001825340.1    Uniprot ID   A0A2S6DDC2
Organism   Staphylococcus aureus strain IVB6252     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631157..1641654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA62_RS07880 (MUA62_07880) gcvPB 1631319..1632791 (-) 1473 WP_000202180.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  MUA62_RS07885 (MUA62_07885) gcvPA 1632784..1634130 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA62_RS07890 (MUA62_07890) gcvT 1634150..1635241 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA62_RS07895 (MUA62_07895) - 1635400..1635924 (-) 525 WP_001015120.1 shikimate kinase -
  MUA62_RS07900 (MUA62_07900) - 1635914..1636060 (-) 147 WP_001789879.1 hypothetical protein -
  MUA62_RS07905 (MUA62_07905) comGF 1636157..1636654 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA62_RS07910 (MUA62_07910) comGE 1636572..1636871 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA62_RS07915 (MUA62_07915) comGD 1636858..1637304 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA62_RS07920 (MUA62_07920) comGC 1637282..1637593 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA62_RS07925 (MUA62_07925) comGB 1637607..1638677 (-) 1071 Protein_1558 competence type IV pilus assembly protein ComGB -
  MUA62_RS07930 (MUA62_07930) comGA 1638649..1639623 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA62_RS07935 (MUA62_07935) - 1639675..1640298 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA62_RS07940 (MUA62_07940) - 1640295..1640624 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA62_RS07945 (MUA62_07945) - 1640624..1641610 (-) 987 WP_000161315.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19179.92 Da        Isoelectric Point: 10.2192

>NTDB_id=671792 MUA62_RS07905 WP_001825340.1 1636157..1636654(-) (comGF) [Staphylococcus aureus strain IVB6252]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITLINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=671792 MUA62_RS07905 WP_001825340.1 1636157..1636654(-) (comGF) [Staphylococcus aureus strain IVB6252]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACATTGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(68-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S6DDC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982
  comGF Staphylococcus aureus MW2

96.97

100

0.97