Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIE71_RS09965 Genome accession   NZ_CP109167
Coordinates   2202987..2204720 (+) Length   577 a.a.
NCBI ID   WP_329039302.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01725     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2197987..2209720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE71_RS09935 (OIE71_09940) - 2199046..2199828 (+) 783 WP_329032956.1 acetoacetate decarboxylase family protein -
  OIE71_RS09955 (OIE71_09960) - 2200973..2201269 (+) 297 WP_147872945.1 YtxH domain-containing protein -
  OIE71_RS09960 (OIE71_09965) - 2201355..2202806 (+) 1452 WP_147872946.1 FGGY family carbohydrate kinase -
  OIE71_RS09965 (OIE71_09970) rcrP 2202987..2204720 (+) 1734 WP_329039302.1 ABC transporter ATP-binding protein Regulator
  OIE71_RS09970 (OIE71_09975) rcrQ 2204720..2206654 (+) 1935 WP_329032957.1 ABC transporter ATP-binding protein Regulator
  OIE71_RS09975 (OIE71_09980) - 2206928..2208184 (-) 1257 WP_329032958.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62688.93 Da        Isoelectric Point: 6.0377

>NTDB_id=671792 OIE71_RS09965 WP_329039302.1 2202987..2204720(+) (rcrP) [Streptomyces sp. NBC_01725]
MLLRLLRTHLVPYKRAIGLLVVLQLLQTCASLYLPTLNADIIDNGVVTGDTGYIMEFGALMIAVSVLQVLGQIGAVYYGA
RTASALGRDVRAAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLGISVSLIVKRMRPLFRSMQERLDTVNRVLREQITGNRVIRAFVRDEYEKKRFEGANTALTETQLATGRLMAL
MFPVVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLDTRSSVVP
PEDPVLMLRRHGHLEVRGAEFRYPGAEEPVLRAVSLTARPGETTAVIGSTGSGKSTLLGLVPRLVDATAGEVLVDGENVR
RLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVTDLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVSTIRDADRIIVMDEGRVVGEGRHRELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=671792 OIE71_RS09965 WP_329039302.1 2202987..2204720(+) (rcrP) [Streptomyces sp. NBC_01725]
GTGCTGCTACGACTACTCAGAACCCATCTGGTCCCCTACAAGAGAGCCATCGGTCTGCTGGTGGTGCTCCAACTGCTGCA
GACCTGCGCCTCCCTCTATCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTGACGGGTGACACGGGTTACA
TCATGGAGTTCGGCGCTCTCATGATCGCCGTGAGCGTCCTCCAGGTGCTCGGCCAGATAGGCGCCGTCTACTACGGTGCG
CGCACCGCCTCGGCCCTCGGCCGGGACGTGCGGGCCGCGATCTTCGACCGGGTGCAGAGCTTCTCCGCCCGTGAGGTCGG
CCAGTTCGGGGCGCCGTCGCTGATCACGCGCACCACCAACGACGTCCAGCAGGTGCAGATGCTGGTGCTGATGTCGTTCA
CGCTCATGGTGTCGGCCCCGATCATGTGTGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTGCCGCTGTCCGCGGTG
CTGCTCGCCGTCGTTCCGGTCCTCGGCATCTCCGTGAGCCTGATCGTGAAGCGGATGCGCCCGCTGTTCCGCAGCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGCGTCATCCGGGCGTTCGTCCGCGACG
AGTACGAGAAGAAGCGGTTCGAGGGCGCCAACACCGCCCTCACCGAGACGCAGCTGGCGACCGGTCGGCTGATGGCGCTG
ATGTTCCCGGTCGTGATGACGGTCGTGAACGTGTCGTCCGTCGCCGTCGTCTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCGAGGAGGTGCTGGACACCAGGTCGAGCGTCGTACCG
CCCGAGGATCCGGTGCTGATGCTGCGCCGGCACGGTCATCTGGAGGTGCGGGGCGCGGAGTTCCGTTACCCGGGGGCCGA
GGAGCCGGTGCTTCGTGCTGTGTCTCTGACCGCCAGACCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCGACACTGCTGGGGCTGGTGCCCCGGCTGGTCGACGCGACGGCCGGCGAGGTGCTGGTGGACGGTGAGAACGTACGC
CGTCTCGATCCGGCGCTGCTGGCCAAAACGGTCAGCCTGGTGCCGCAGAAGCCGTATCTGTTCTCGGGCACGGTGGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCACCGACCTGGAGGGCGGGCTGAACGCGCCCATCGCGCAGGGCGGGACGAACGTCTCCGGTGGGCAGCGCCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGAGCCGCCCTGGCGCGCGAGACCGCGGAGGCGACGGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCATCGTCATGGACGAGGGCCGGGTGGTCGGTGAGGGACGCCATCGCGAACTGATGGCCGGGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.418

99.48

0.402