Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIE71_RS09970 Genome accession   NZ_CP109167
Coordinates   2204720..2206654 (+) Length   644 a.a.
NCBI ID   WP_329032957.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01725     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2199720..2211654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE71_RS09955 (OIE71_09960) - 2200973..2201269 (+) 297 WP_147872945.1 YtxH domain-containing protein -
  OIE71_RS09960 (OIE71_09965) - 2201355..2202806 (+) 1452 WP_147872946.1 FGGY family carbohydrate kinase -
  OIE71_RS09965 (OIE71_09970) rcrP 2202987..2204720 (+) 1734 WP_329039302.1 ABC transporter ATP-binding protein Regulator
  OIE71_RS09970 (OIE71_09975) rcrQ 2204720..2206654 (+) 1935 WP_329032957.1 ABC transporter ATP-binding protein Regulator
  OIE71_RS09975 (OIE71_09980) - 2206928..2208184 (-) 1257 WP_329032958.1 RNA polymerase sigma factor -
  OIE71_RS09980 (OIE71_09985) dnaG 2208394..2210316 (-) 1923 WP_329032959.1 DNA primase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69251.42 Da        Isoelectric Point: 5.4222

>NTDB_id=671793 OIE71_RS09970 WP_329032957.1 2204720..2206654(+) (rcrQ) [Streptomyces sp. NBC_01725]
MSGPGGRMMAAGAGSPSQRSMDFKGSSKRLLRQLAREKVTLWWMVAAGVLSVAASVVGPKILGSATDLIFAGVVGRQTPG
GAGKEETVSRLREEGDSGLADLLSGVDFVPGQGIDFDAVGRVLLVALAVYVAAGLLMLVSTRLSIRAINLTIYRMREDVQ
AKLSRLPLSYFDRQQRGEVLSRATNDVDNISQTLQQTMGQLINSLLTIVGVLGMMLWISPLLALVALVTVPLSVLVATKV
GKRSQPHFVQQWKSTGTLNAHIEEMYTGHALVKVFGRQDESARAFKEQNEALYQAGFKAQLNSGVMQPLMFFVSNLNYVL
VAVVGGLRVASGTLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQEKDAPSAARPHELRGRVG
LDGVAFRYEPDKPLIDDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTAGRISLDDIDIATMSREDLRSRIGMVLQ
DTWLFGGTIAENIAYGAAREVTREEIEEAARAAHADRFIRTLPDGYETVIDDEGSGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAQLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHGGLLAAQGAYARLYAAQFAQAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=671793 OIE71_RS09970 WP_329032957.1 2204720..2206654(+) (rcrQ) [Streptomyces sp. NBC_01725]
ATGAGCGGTCCTGGCGGACGCATGATGGCGGCCGGCGCGGGTTCCCCGTCGCAGCGGTCGATGGATTTCAAGGGGTCGAG
CAAACGGCTGCTGCGGCAGCTCGCGCGGGAGAAGGTCACCCTGTGGTGGATGGTCGCCGCGGGTGTGCTGAGCGTGGCCG
CCTCGGTGGTCGGCCCGAAGATACTCGGCTCGGCGACCGACCTGATCTTCGCGGGGGTCGTCGGCCGTCAGACGCCGGGG
GGCGCCGGCAAGGAGGAGACCGTCTCGCGGCTCCGGGAGGAGGGCGACAGCGGGCTCGCCGACCTGCTCTCCGGGGTGGA
CTTCGTACCGGGGCAGGGCATCGACTTCGACGCGGTCGGCCGGGTCCTGCTGGTGGCGCTGGCGGTGTACGTCGCGGCCG
GGCTGCTGATGCTGGTCTCGACGCGGCTGTCGATCCGGGCCATCAACCTCACCATCTACCGGATGCGCGAGGACGTACAG
GCCAAGCTGTCACGGCTGCCGCTGTCGTACTTCGACCGTCAGCAGCGCGGTGAGGTCCTGAGCCGGGCGACGAACGACGT
CGACAACATCTCCCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTGACGATCGTCGGTGTCCTCGGGA
TGATGCTGTGGATCTCGCCCCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGGTGCTGGTGGCGACGAAGGTC
GGCAAGCGCTCGCAGCCGCACTTCGTACAGCAGTGGAAGTCGACGGGCACGCTGAACGCCCATATCGAGGAGATGTACAC
CGGGCACGCCCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCGGGCGTTCAAGGAGCAGAACGAGGCGCTGTACC
AGGCCGGTTTCAAGGCGCAGCTCAACAGCGGCGTGATGCAGCCGCTGATGTTCTTCGTCTCCAACCTCAACTATGTGCTG
GTGGCGGTCGTCGGCGGGCTGCGCGTCGCGTCGGGGACGCTGTCGATCGGTGACGTACAGGCGTTCGTCCAGTACTCGCG
CCAGTTCTCGATGCCACTGACGCAGGTGGCATCGATGGCCAACCTCGTCCAGTCCGGGGTCGCGTCCGCCGAGCGGATCT
TCGAGCTGCTGGACGCGGACGAGCAGGAGAAGGACGCTCCCTCGGCCGCGCGCCCGCACGAGTTGCGGGGACGCGTGGGG
CTGGACGGCGTGGCGTTCCGCTACGAGCCGGACAAGCCTCTCATCGACGACCTGTCGCTGTCGGTGGAGCCGGGCCAGAC
GGTGGCCATCGTCGGCCCGACGGGCGCGGGGAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGCCG
GCCGGATCAGTCTGGACGACATCGACATCGCCACCATGTCGCGGGAGGACCTGCGGTCCCGGATAGGCATGGTCCTCCAG
GACACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCGGCGCGCGAGGTCACCCGGGAGGAGATCGA
GGAGGCGGCGCGGGCGGCCCACGCGGACCGTTTCATCCGCACGCTGCCCGACGGCTACGAGACCGTGATCGACGACGAGG
GGTCGGGCGTCAGCGCGGGCGAGAAGCAGCTCATCACGATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTG
GACGAGGCGACCAGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCAACTGGCGCACGGGCGGAC
GAGCTTCGTGATCGCCCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATAGTCG
AACAGGGCACGCACGGAGGGCTGCTCGCGGCGCAGGGCGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAAGCGGTG
GCCGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(416-565)

ABC transporter transmembrane region (ABC_membrane)

(47-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.871

96.584

0.385