Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA51_RS05590 Genome accession   NZ_CP094723
Coordinates   1153798..1154118 (-) Length   106 a.a.
NCBI ID   WP_262558265.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6214     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1148798..1159118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA51_RS05565 (MUA51_05560) gcvPA 1149394..1150743 (-) 1350 WP_262558259.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA51_RS05570 (MUA51_05565) gcvT 1150756..1151847 (-) 1092 WP_262558260.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA51_RS05575 (MUA51_05570) - 1152006..1152530 (-) 525 WP_262558261.1 shikimate kinase -
  MUA51_RS05580 (MUA51_05575) - 1152696..1153094 (-) 399 WP_262558263.1 competence type IV pilus minor pilin ComGF -
  MUA51_RS05585 (MUA51_05580) comGD 1153377..1153808 (-) 432 WP_262558264.1 competence type IV pilus minor pilin ComGD -
  MUA51_RS05590 (MUA51_05585) comGC 1153798..1154118 (-) 321 WP_262558265.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA51_RS05595 (MUA51_05590) comGB 1154130..1155197 (-) 1068 WP_262558266.1 competence type IV pilus assembly protein ComGB -
  MUA51_RS05600 (MUA51_05595) comGA 1155166..1156140 (-) 975 WP_262558268.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA51_RS05605 (MUA51_05600) - 1156206..1156829 (-) 624 WP_262558269.1 MBL fold metallo-hydrolase -
  MUA51_RS05610 (MUA51_05605) - 1156855..1157166 (-) 312 WP_262558270.1 MTH1187 family thiamine-binding protein -
  MUA51_RS05615 (MUA51_05610) - 1157173..1158153 (-) 981 WP_262558272.1 ROK family glucokinase -
  MUA51_RS05620 (MUA51_05615) - 1158150..1158353 (-) 204 WP_262558273.1 YqgQ family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11988.14 Da        Isoelectric Point: 9.1077

>NTDB_id=671296 MUA51_RS05590 WP_262558265.1 1153798..1154118(-) (comGC) [Staphylococcus sp. IVB6214]
MKKLFSMIKQNKAFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCKAQTRLVDSQIEAYTLKFNHKPDSIDDLVRE
GYIKENQKTCKSGETIRIQDGEAVAS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=671296 MUA51_RS05590 WP_262558265.1 1153798..1154118(-) (comGC) [Staphylococcus sp. IVB6214]
ATGAAAAAATTATTTTCAATGATAAAACAAAACAAAGCTTTTACTTTAATTGAAATGTTGCTAGTCCTTTTAATCATAAG
TGTATTGCTTATATTGATTATCCCCAATATTGCAAAACAATCCGATCATATTCAAAAGACGGGTTGCAAAGCACAAACAC
GACTTGTCGATAGTCAGATTGAAGCTTATACATTAAAGTTTAATCACAAACCAGATTCAATTGATGATCTTGTAAGAGAA
GGTTACATCAAAGAAAATCAAAAAACATGTAAATCCGGCGAAACAATCCGAATTCAAGATGGTGAGGCTGTTGCATCATA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

69.903

97.17

0.679
  comGC Staphylococcus aureus N315

69.903

97.17

0.679
  comYC Streptococcus suis isolate S10

48.276

82.075

0.396
  comGC/cglC Streptococcus mitis SK321

46.067

83.962

0.387
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae D39

44.944

83.962

0.377
  comGC/cglC Streptococcus pneumoniae R6

44.944

83.962

0.377
  comGC/cglC Streptococcus pneumoniae TIGR4

44.944

83.962

0.377
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

83.962

0.377
  comGC Bacillus subtilis subsp. subtilis str. 168

43.956

85.849

0.377
  comYC Streptococcus mutans UA140

50

73.585

0.368
  comYC Streptococcus mutans UA159

50

73.585

0.368