Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA92_RS05345 Genome accession   NZ_CP094721
Coordinates   1088824..1089144 (-) Length   106 a.a.
NCBI ID   WP_262615897.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6227     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1083824..1094144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA92_RS05320 (MUA92_05320) gcvPA 1084420..1085769 (-) 1350 WP_262558259.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA92_RS05325 (MUA92_05325) gcvT 1085782..1086873 (-) 1092 WP_262558260.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA92_RS05330 (MUA92_05330) - 1087032..1087556 (-) 525 WP_262615895.1 shikimate kinase -
  MUA92_RS05335 (MUA92_05335) - 1087722..1088120 (-) 399 WP_262558263.1 competence type IV pilus minor pilin ComGF -
  MUA92_RS05340 (MUA92_05340) comGD 1088403..1088834 (-) 432 WP_262558264.1 competence type IV pilus minor pilin ComGD -
  MUA92_RS05345 (MUA92_05345) comGC 1088824..1089144 (-) 321 WP_262615897.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA92_RS05350 (MUA92_05350) comGB 1089156..1090223 (-) 1068 WP_262558266.1 competence type IV pilus assembly protein ComGB -
  MUA92_RS05355 (MUA92_05355) comGA 1090192..1091166 (-) 975 WP_262615898.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA92_RS05360 (MUA92_05360) - 1091232..1091855 (-) 624 WP_262558269.1 MBL fold metallo-hydrolase -
  MUA92_RS05365 (MUA92_05365) - 1091881..1092192 (-) 312 WP_262558270.1 MTH1187 family thiamine-binding protein -
  MUA92_RS05370 (MUA92_05370) - 1092199..1093179 (-) 981 WP_262558272.1 ROK family glucokinase -
  MUA92_RS05375 (MUA92_05375) - 1093176..1093379 (-) 204 WP_262558273.1 YqgQ family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11974.11 Da        Isoelectric Point: 9.1077

>NTDB_id=671231 MUA92_RS05345 WP_262615897.1 1088824..1089144(-) (comGC) [Staphylococcus sp. IVB6227]
MKKLFSMIKQNKAFTLIEMLLVLLIISVLLILIIPNIAKQSDHVQKTGCKAQTRLVDSQIEAYTLKFNHKPDSIDDLVRE
GYIKENQKTCKSGETIRIQDGEAVAS

Nucleotide


Download         Length: 321 bp        

>NTDB_id=671231 MUA92_RS05345 WP_262615897.1 1088824..1089144(-) (comGC) [Staphylococcus sp. IVB6227]
ATGAAAAAATTATTTTCAATGATAAAACAAAACAAAGCTTTTACTTTAATTGAAATGTTGCTAGTCCTTTTAATCATAAG
TGTATTGCTTATATTGATTATCCCCAATATTGCAAAACAATCCGATCATGTTCAAAAGACGGGTTGCAAAGCACAAACAC
GACTTGTCGATAGTCAGATTGAAGCTTATACATTAAAGTTTAATCACAAACCAGATTCAATTGATGATCTTGTAAGAGAA
GGTTACATCAAAGAAAATCAAAAAACATGTAAATCCGGCGAAACAATCCGAATTCAAGATGGTGAGGCTGTTGCATCATA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

68.932

97.17

0.67
  comGC Staphylococcus aureus N315

68.932

97.17

0.67
  comGC/cglC Streptococcus mitis NCTC 12261

47.191

83.962

0.396
  comGC/cglC Streptococcus mitis SK321

47.191

83.962

0.396
  comGC/cglC Streptococcus pneumoniae D39

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae R6

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae TIGR4

46.067

83.962

0.387
  comGC/cglC Streptococcus pneumoniae Rx1

46.067

83.962

0.387
  comYC Streptococcus suis isolate S10

47.126

82.075

0.387
  comYC Streptococcus mutans UA140

51.282

73.585

0.377
  comYC Streptococcus mutans UA159

51.282

73.585

0.377
  comGC Bacillus subtilis subsp. subtilis str. 168

42.857

85.849

0.368