Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHB04_RS27860 Genome accession   NZ_CP109104
Coordinates   6266378..6266983 (+) Length   201 a.a.
NCBI ID   WP_326692941.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01775     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6261378..6271983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB04_RS27835 (OHB04_27860) - 6262008..6263231 (-) 1224 WP_326690385.1 acyltransferase family protein -
  OHB04_RS27840 (OHB04_27865) - 6263843..6264037 (+) 195 WP_326690386.1 hypothetical protein -
  OHB04_RS27855 (OHB04_27880) tig 6264664..6266106 (+) 1443 WP_326690387.1 trigger factor -
  OHB04_RS27860 (OHB04_27885) clpP 6266378..6266983 (+) 606 WP_326692941.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB04_RS27865 (OHB04_27890) clpP 6267051..6267710 (+) 660 WP_326690388.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHB04_RS27870 (OHB04_27895) clpX 6267874..6269157 (+) 1284 WP_326692942.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHB04_RS27875 (OHB04_27900) - 6269306..6270157 (-) 852 WP_326690389.1 hypothetical protein -
  OHB04_RS27880 (OHB04_27905) - 6270428..6271456 (-) 1029 WP_326808549.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21393.15 Da        Isoelectric Point: 4.4782

>NTDB_id=670864 OHB04_RS27860 WP_326692941.1 6266378..6266983(+) (clpP) [Streptomyces sp. NBC_01775]
MPSAAGEPNFGGGLGDQVYNRLLDERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSIQAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLTAGTPGKRFALPNADILIHQPSAGLAGSATDIKIHAEQLLRTKKKMAELSAAHSGQTVE
QWTRDADRDRWFTAEEARDYGLIDEVYGNAAQLPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=670864 OHB04_RS27860 WP_326692941.1 6266378..6266983(+) (clpP) [Streptomyces sp. NBC_01775]
ATGCCTTCCGCCGCCGGTGAGCCCAACTTCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGACGAGCGCAT
CATTTTCCTCGGCCAGCCGGTGGACGACGATATCGCCAACAAGATCACCGCCCAGCTTCTGCTCCTTGCCGCCGATCCGG
ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCCAGGCGGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTCGTCACCATCGCCATGGGACTGGCGGCTTCGATGGGGCAGTTCCTGCTCACGGCGGGCACCCCCGG
CAAGCGGTTCGCGCTGCCGAACGCCGACATCCTCATCCACCAGCCCTCCGCGGGCCTGGCGGGCTCCGCGACGGACATCA
AGATCCACGCCGAGCAGCTTCTGCGCACCAAGAAGAAGATGGCCGAGCTGTCGGCCGCGCACAGCGGTCAGACCGTCGAG
CAGTGGACCCGCGACGCCGACCGTGACCGCTGGTTCACCGCTGAGGAGGCGCGGGACTACGGCCTCATCGACGAGGTCTA
CGGCAACGCCGCGCAGCTTCCCGGCGGCGGCGGAACGGGTGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

54.545

93.035

0.507
  clpP Lactococcus lactis subsp. cremoris KW2

54.286

87.065

0.473
  clpP Streptococcus mutans UA159

54.286

87.065

0.473
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.714

87.065

0.468
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.706

84.577

0.463
  clpP Streptococcus pyogenes MGAS315

52

87.065

0.453
  clpP Streptococcus pyogenes JRS4

52

87.065

0.453
  clpP Streptococcus thermophilus LMG 18311

52

87.065

0.453
  clpP Streptococcus thermophilus LMD-9

52

87.065

0.453
  clpP Streptococcus pneumoniae Rx1

51.429

87.065

0.448
  clpP Streptococcus pneumoniae D39

51.429

87.065

0.448
  clpP Streptococcus pneumoniae R6

51.429

87.065

0.448
  clpP Streptococcus pneumoniae TIGR4

51.429

87.065

0.448