Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MRE03_RS04025 Genome accession   NZ_CP094661
Coordinates   846572..847813 (+) Length   413 a.a.
NCBI ID   WP_013245561.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain SCB0563     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 841572..852813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRE03_RS04005 (MRE03_04005) - 842572..843864 (+) 1293 WP_004469407.1 pitrilysin family protein -
  MRE03_RS04010 (MRE03_04010) - 843864..844592 (+) 729 WP_013245560.1 SDR family oxidoreductase -
  MRE03_RS04015 (MRE03_04015) - 844679..845608 (+) 930 WP_003569516.1 helix-turn-helix domain-containing protein -
  MRE03_RS04020 (MRE03_04020) pgsA 845605..846198 (+) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MRE03_RS04025 (MRE03_04025) cinA 846572..847813 (+) 1242 WP_013245561.1 competence/damage-inducible protein A Machinery gene
  MRE03_RS04030 (MRE03_04030) recA 847870..848931 (+) 1062 WP_003587498.1 recombinase RecA Machinery gene
  MRE03_RS04035 (MRE03_04035) rny 849226..850797 (+) 1572 WP_003657913.1 ribonuclease Y -
  MRE03_RS04040 (MRE03_04040) - 850891..851541 (-) 651 WP_003574282.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44256.55 Da        Isoelectric Point: 6.0028

>NTDB_id=670512 MRE03_RS04025 WP_013245561.1 846572..847813(+) (cinA) [Lacticaseibacillus paracasei strain SCB0563]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTAVGIDSYHQQVVGDNGPRLEEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=670512 MRE03_RS04025 WP_013245561.1 846572..847813(+) (cinA) [Lacticaseibacillus paracasei strain SCB0563]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCAGTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACACCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGTGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCGAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.651

100

0.53
  cinA Streptococcus mitis SK321

51.537

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.415

100

0.528
  cinA Streptococcus pneumoniae R6

50.948

100

0.521
  cinA Streptococcus pneumoniae Rx1

50.948

100

0.521
  cinA Streptococcus mutans UA159

51.932

100

0.521
  cinA Streptococcus pneumoniae D39

50.711

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

45.012

99.516

0.448
  cinA Streptococcus suis isolate S10

42.063

91.525

0.385