Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ISX51_RS11545 Genome accession   NZ_CP094659
Coordinates   2567777..2568076 (+) Length   99 a.a.
NCBI ID   WP_102249863.1    Uniprot ID   -
Organism   Vibrio lentus strain ED252     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2562777..2573076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISX51_RS11535 (ISX51_11525) - 2565172..2565465 (+) 294 WP_012604504.1 HU family DNA-binding protein -
  ISX51_RS11540 (ISX51_11530) ppiD 2565686..2567551 (+) 1866 WP_281052745.1 peptidylprolyl isomerase -
  ISX51_RS11545 (ISX51_11535) comEA 2567777..2568076 (+) 300 WP_102249863.1 ComEA family DNA-binding protein Machinery gene
  ISX51_RS11550 (ISX51_11540) rrtA 2568067..2568615 (-) 549 WP_281052746.1 rhombosortase -
  ISX51_RS11555 (ISX51_11545) - 2568625..2569224 (+) 600 WP_281052747.1 DTW domain-containing protein -
  ISX51_RS11560 (ISX51_11550) - 2569251..2570594 (-) 1344 WP_281052748.1 anti-phage deoxyguanosine triphosphatase -
  ISX51_RS11565 (ISX51_11555) yfbR 2570650..2571234 (-) 585 WP_281052749.1 5'-deoxynucleotidase -
  ISX51_RS11570 (ISX51_11560) - 2571405..2572637 (-) 1233 WP_017110067.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10716.24 Da        Isoelectric Point: 4.4944

>NTDB_id=670496 ISX51_RS11545 WP_102249863.1 2567777..2568076(+) (comEA) [Vibrio lentus strain ED252]
MRAIYSTLLLSFLITLSSAVLADSPTKAELYDGIEITVNINTATAEELSALLVGVGDKKAKEIVDYREKNGEFATADSLV
NVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=670496 ISX51_RS11545 WP_102249863.1 2567777..2568076(+) (comEA) [Vibrio lentus strain ED252]
ATGCGCGCGATATATTCAACACTACTTCTTTCATTTCTTATTACCCTGAGCTCTGCAGTGCTTGCTGATAGCCCAACTAA
AGCTGAGCTATACGATGGCATTGAGATCACGGTAAACATCAACACAGCGACAGCAGAAGAGCTATCAGCCTTATTAGTAG
GTGTGGGCGATAAGAAAGCAAAAGAGATTGTTGATTACAGAGAGAAGAACGGTGAGTTTGCCACCGCTGACAGTTTGGTT
AACGTGAAAGGGATAGGTGAAGCCACGGTCGAAAAGAACCGTGAAAGAATTCAGCTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

54.167

96.97

0.525
  comEA Vibrio cholerae strain A1552

54.167

96.97

0.525
  comEA Vibrio parahaemolyticus RIMD 2210633

55.319

94.949

0.525
  comEA Vibrio campbellii strain DS40M4

54.348

92.929

0.505
  comEA Acinetobacter baylyi ADP1

48.78

82.828

0.404
  comEA/comE1 Glaesserella parasuis strain SC1401

61.667

60.606

0.374
  comE1/comEA Haemophilus influenzae Rd KW20

60

60.606

0.364
  comEA Legionella pneumophila str. Paris

35.294

100

0.364
  comEA Legionella pneumophila strain ERS1305867

35.294

100

0.364