Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MMY79_RS01535 Genome accession   NZ_CP094657
Coordinates   319690..321813 (+) Length   707 a.a.
NCBI ID   WP_252611517.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314690..326813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS01515 (MMY79_01515) pilM 316644..317702 (+) 1059 WP_252611508.1 pilus assembly protein PilM Machinery gene
  MMY79_RS01520 (MMY79_01520) pilN 317702..318343 (+) 642 WP_252611510.1 PilN domain-containing protein Machinery gene
  MMY79_RS01525 (MMY79_01525) pilO 318340..319089 (+) 750 WP_252611513.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMY79_RS01530 (MMY79_01530) pilP 319100..319627 (+) 528 WP_252611515.1 pilus assembly protein PilP Machinery gene
  MMY79_RS01535 (MMY79_01535) pilQ 319690..321813 (+) 2124 WP_252611517.1 type IV pilus secretin PilQ family protein Machinery gene
  MMY79_RS01540 (MMY79_01540) aroK 321825..322394 (+) 570 WP_252611518.1 shikimate kinase AroK -
  MMY79_RS01545 (MMY79_01545) aroB 322423..323505 (+) 1083 WP_252611520.1 3-dehydroquinate synthase -
  MMY79_RS01550 (MMY79_01550) - 323522..324403 (+) 882 WP_252611522.1 hypothetical protein -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 76625.12 Da        Isoelectric Point: 6.3986

>NTDB_id=670418 MMY79_RS01535 WP_252611517.1 319690..321813(+) (pilQ) [Acinetobacter sp. XS-4]
MNHVFRQFSMGAVAIALMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKANQTLTQSKV
AVATNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAAIKPLPTATVQSQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKNVNTASKLSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNLD
KRRNGNVIWIAPVAELIKAEDDESKALAQTIKLAPIQTDYIHLSYAKAIDLLKLIEDSRDGKGAVANRTANSDSLALESL
LSSRGSAVADTRTNTLIINDTAQNIDKIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGG
SETTLWNLRKPEKDTTTGAYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTAD
KQSAKVATGQQVPYLMTTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTNV
LVNDGETVILGGVFEQTTTNSQTKVPFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=670418 MMY79_RS01535 WP_252611517.1 319690..321813(+) (pilQ) [Acinetobacter sp. XS-4]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCCATTGCACTTATGCAGGTTGCCTCTGCACAGGTCAGCAT
GACCAATATTGTACCGACACAAATTGCAGGTCAGGGTACAGAAATTAGAGTTATGTTCAATGGTTTGCCACCACAGCCAC
AGGCATATCAGCTTGAAAATCCTTCACGTTTGATTTTGGATTTTAATAAAGCTAACCAGACTTTAACACAGTCAAAAGTA
GCGGTTGCTACAAATGAAGCGAGCTCTGTTGATGTAAGTTCTGACGATCAGCGTTCACGTTTAACTGTCAATTTAAAAGA
GGCAGGTGCGTTTACAACACGTATTGAAGGCAATACTTTTATTTTAAAGATTAATTCAGCTCAAGCGGCTATTAAGCCTT
TACCAACAGCTACAGTGCAATCCCAAGGTGTTTCAAATATTGGTTTTCAGCGTGGAAGTCAAGGTGAAGGGTTAATTGTT
ATTGATTTACTCGGAAGCAATACCCCTGTTGATGTTCAGCAACAAGGTAGCAAAGTCGTAGTGAGAACTCTGGGCTCTAA
AATTCCTACACATTTGGCTAAACGTTTAAATGTGAACGATTTTGCGACCCCTGTTTCTACCATCGAGTCTTATAACGAAA
AAGGTAATGGCGTTATTACGATCCAATCTAGTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAACTCACCATT
AGCTTAAAGCGTCCTCAGGACAAAAATGTAAATACTGCATCTAAGCTATCTTATTCTGGTAATAAGCTTTCTCTTGATTT
TCAAGATATTGAAGTTCGTAGAGTTCTACAGTTACTTGCTGATTTTACGGGCATTAATATGGTAGCTGCCGATAGTGTGC
AGGGTAATATTACTTTGCGCTTGAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAGACCAAAAATCTTGAT
AAACGCAGAAATGGCAATGTTATTTGGATTGCTCCAGTTGCAGAGCTGATTAAGGCCGAAGATGATGAATCAAAAGCTTT
AGCACAAACGATTAAGTTAGCACCGATTCAAACTGATTATATTCATTTGAGTTATGCTAAAGCCATAGATTTACTTAAGT
TAATCGAAGATTCTCGTGATGGTAAGGGGGCAGTTGCGAATCGTACTGCAAACTCGGATTCTCTTGCGTTGGAGAGCTTA
TTAAGTTCACGCGGTAGTGCTGTGGCTGATACCCGTACTAATACTTTAATTATTAATGATACAGCACAAAATATTGATAA
AATTCGTAAAATGATTGATTTGCTTGATGTACAAGTGAAGCAGGTCATGGTCGAAGCGCGTATTGTAAGAGCATCTACAT
CTTTCACCAAAGAACTAGGCGTTAAATGGGGAATATTGTCGCAAGGGATTACCAATAATAATAACTTGCTGGTTGGTGGT
AGTGAAACAACCTTATGGAATTTAAGAAAGCCAGAAAAAGACACTACTACGGGTGCCTATAAATATACGATTGAACGTCC
AGATAACTTAAATGTCGATTTAGGGGTAACCAATCCTGCGGGAAGTATTGCCTTTGGTTTAATTAGCATGTCTGATTTTA
TGCTTGATCTTGAACTTTCCGCATTACAAGCCGATGGCTATGGTGAAGTTATTTCTACTCCTAAAGTCATGACAGCAGAT
AAACAATCTGCAAAAGTCGCTACTGGTCAGCAAGTTCCTTATCTGATGACGACTACTTCTGGTGCTGGTTCCACAGCAAC
TACTTCATTTAAAGATGCACTCCTAAGCTTGGATGTTACCCCAAGTATTACGCCTGATGGTAAAATTCAAATGAAATTAG
ATATTTCTAAGGATTCTGTAGCAGGCGAAGCCCCTAATGGTGAGTTAATTTTAAATAAAAATAATATTAATACGAATGTA
TTGGTTAATGATGGTGAAACGGTCATTTTAGGAGGGGTGTTTGAGCAGACGACAACTAACTCACAAACCAAGGTTCCTTT
CTTTGGTGATATTCCTGTACTTGGGCATTTATTCAGAAAAGATGTGAAATCTGATGATAAACAAGAGTTACTGATTTTCG
TTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-118)

Bacterial type II and III secretion system protein (Secretin)

(541-699)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-441)

Secretin and TonB N terminus short domain (STN)

(290-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

85.021

100

0.867
  pilQ Acinetobacter baumannii strain A118

84.882

100

0.866
  comQ Acinetobacter baylyi ADP1

72.626

100

0.736
  pilQ Pseudomonas aeruginosa PAK

38.92

99.576

0.388