Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   MMY79_RS01525 Genome accession   NZ_CP094657
Coordinates   318340..319089 (+) Length   249 a.a.
NCBI ID   WP_252611513.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313340..324089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS01510 (MMY79_01510) ponA 313922..316483 (-) 2562 WP_252611506.1 penicillin-binding protein PBP1a -
  MMY79_RS01515 (MMY79_01515) pilM 316644..317702 (+) 1059 WP_252611508.1 pilus assembly protein PilM Machinery gene
  MMY79_RS01520 (MMY79_01520) pilN 317702..318343 (+) 642 WP_252611510.1 PilN domain-containing protein Machinery gene
  MMY79_RS01525 (MMY79_01525) pilO 318340..319089 (+) 750 WP_252611513.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMY79_RS01530 (MMY79_01530) pilP 319100..319627 (+) 528 WP_252611515.1 pilus assembly protein PilP Machinery gene
  MMY79_RS01535 (MMY79_01535) pilQ 319690..321813 (+) 2124 WP_252611517.1 type IV pilus secretin PilQ family protein Machinery gene
  MMY79_RS01540 (MMY79_01540) aroK 321825..322394 (+) 570 WP_252611518.1 shikimate kinase AroK -
  MMY79_RS01545 (MMY79_01545) aroB 322423..323505 (+) 1083 WP_252611520.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 28126.97 Da        Isoelectric Point: 4.7751

>NTDB_id=670416 MMY79_RS01525 WP_252611513.1 318340..319089(+) (pilO) [Acinetobacter sp. XS-4]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWFFIFFAVLALGYFVVIQPKLQAIDNAEAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVSSGLKFKNIRLEDEVKQEIFIEQP
ITMEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVKDSKSDIPVLNYSIKAKTYRYMGAVENAEHPENNASASVAPV
SSTANTQSK

Nucleotide


Download         Length: 750 bp        

>NTDB_id=670416 MMY79_RS01525 WP_252611513.1 318340..319089(+) (pilO) [Acinetobacter sp. XS-4]
ATGAGTCCGGATGAACTTCATGAGTTGTCGTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACTTTAGAAAAATTTCT
TCAGCAATTTAACACCCTAGATATGAACAGTTATGGTAGCTGGCCATTATCTGTGAAAATTACGTGCTGGTTTTTTATTT
TCTTTGCTGTATTGGCTTTGGGGTACTTTGTTGTTATTCAGCCAAAGCTACAAGCAATTGATAATGCAGAGGCGCAAGAA
AGTAATTTGTTGAATGAGTTTCGAGAAAAGGATTCAAAATTACGTAATTTGCAGCAGTATCAGCTTCAGCTTCAAGAGAT
GCAAGCAAACTTTAATCAGCAGTTAGAGCAACTGCCAAAAGAAACCGAAATTCCAAGCTTGGTTGAGGATATTAACTTAA
CTGGTGTGAGTTCTGGTCTGAAGTTTAAGAATATCCGTTTAGAAGATGAAGTGAAGCAGGAAATCTTTATTGAACAGCCT
ATTACGATGGAAGCAACTGGCGATTATCACGCTTTTGGTGCCTTTGTTAGTAGTATTGCGGCATTACCACGTATTGTGAC
GATGCATGATTTTGTTGTAGAGGCTGCACCTGTTAAAGATAGTAAGTCAGATATTCCTGTACTTAACTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGCGCCGTAGAAAATGCTGAACATCCAGAAAATAATGCTTCGGCTTCTGTAGCACCTGTT
TCCTCTACTGCTAATACACAGTCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

81.928

100

0.819
  comO Acinetobacter baylyi ADP1

68.548

99.598

0.683