Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MMY79_RS01530 Genome accession   NZ_CP094657
Coordinates   319100..319627 (+) Length   175 a.a.
NCBI ID   WP_252611515.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314100..324627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS01515 (MMY79_01515) pilM 316644..317702 (+) 1059 WP_252611508.1 pilus assembly protein PilM Machinery gene
  MMY79_RS01520 (MMY79_01520) pilN 317702..318343 (+) 642 WP_252611510.1 PilN domain-containing protein Machinery gene
  MMY79_RS01525 (MMY79_01525) pilO 318340..319089 (+) 750 WP_252611513.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMY79_RS01530 (MMY79_01530) pilP 319100..319627 (+) 528 WP_252611515.1 pilus assembly protein PilP Machinery gene
  MMY79_RS01535 (MMY79_01535) pilQ 319690..321813 (+) 2124 WP_252611517.1 type IV pilus secretin PilQ family protein Machinery gene
  MMY79_RS01540 (MMY79_01540) aroK 321825..322394 (+) 570 WP_252611518.1 shikimate kinase AroK -
  MMY79_RS01545 (MMY79_01545) aroB 322423..323505 (+) 1083 WP_252611520.1 3-dehydroquinate synthase -
  MMY79_RS01550 (MMY79_01550) - 323522..324403 (+) 882 WP_252611522.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19283.35 Da        Isoelectric Point: 9.4623

>NTDB_id=670417 MMY79_RS01530 WP_252611515.1 319100..319627(+) (pilP) [Acinetobacter sp. XS-4]
MKLKQISFSILACLVLVGCDSRIDAVNQQMANIRNQPPQPIDPAPVFTAVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=670417 MMY79_RS01530 WP_252611515.1 319100..319627(+) (pilP) [Acinetobacter sp. XS-4]
ATGAAACTTAAGCAAATTTCTTTTTCTATTTTGGCATGTTTAGTTTTAGTTGGATGTGACTCGAGAATTGATGCTGTAAA
TCAGCAAATGGCAAATATACGTAATCAGCCACCACAGCCGATCGACCCAGCTCCTGTTTTTACAGCTGTGCCACAATTTA
ATTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACGA
GTCTATCCGAATTTTTCACGTGCACCTCAGCCCCTAGAAAGTTATGCATTAGAATCCTTAAACATGAAAGGAAGTATACG
TAATAACCGTGGGCAAGTACTGGCTCTTATCCAATCACCTGATCAGCAAATTGAGCGGGTACAGGTGGGGAACTATATTG
GGATGAATCAAGGACGTATTACTCATATTGGTCCAACCCAAATTGATCTGGTAGAAATTGTCCCTGATGGGCGCGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGGCCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

89.714

100

0.897
  comL Acinetobacter baylyi ADP1

72.727

94.286

0.686