Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MMY79_RS01520 Genome accession   NZ_CP094657
Coordinates   317702..318343 (+) Length   213 a.a.
NCBI ID   WP_252611510.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 312702..323343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS01500 (MMY79_01500) - 312709..313041 (+) 333 WP_252611502.1 hypothetical protein -
  MMY79_RS01505 (MMY79_01505) - 313044..313868 (+) 825 WP_252611504.1 putative RNA methyltransferase -
  MMY79_RS01510 (MMY79_01510) ponA 313922..316483 (-) 2562 WP_252611506.1 penicillin-binding protein PBP1a -
  MMY79_RS01515 (MMY79_01515) pilM 316644..317702 (+) 1059 WP_252611508.1 pilus assembly protein PilM Machinery gene
  MMY79_RS01520 (MMY79_01520) pilN 317702..318343 (+) 642 WP_252611510.1 PilN domain-containing protein Machinery gene
  MMY79_RS01525 (MMY79_01525) pilO 318340..319089 (+) 750 WP_252611513.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMY79_RS01530 (MMY79_01530) pilP 319100..319627 (+) 528 WP_252611515.1 pilus assembly protein PilP Machinery gene
  MMY79_RS01535 (MMY79_01535) pilQ 319690..321813 (+) 2124 WP_252611517.1 type IV pilus secretin PilQ family protein Machinery gene
  MMY79_RS01540 (MMY79_01540) aroK 321825..322394 (+) 570 WP_252611518.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23841.17 Da        Isoelectric Point: 6.4518

>NTDB_id=670415 MMY79_RS01520 WP_252611510.1 317702..318343(+) (pilN) [Acinetobacter sp. XS-4]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFSGWFYLNQKLDDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASQWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDGYGSFVVTVDLGEAGVTTTADTTNTSVSTDKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=670415 MMY79_RS01520 WP_252611510.1 317702..318343(+) (pilN) [Acinetobacter sp. XS-4]
ATGGCAACAATTAACTTACTCCCTTGGCGTGATGGGCTTAGGGAACAGCGCAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTCTGGGGATCACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAGATGATCAAGAACAAGCTA
ATCAACTCATCACCAGTACAAACCAGAGTCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGATGCC
ATTATCGAGCGTATGAAACTTATTCAGGGATTGCAAAGTCAACGTCCTGTTGTTGTGCGTTTGGTAGATGAATTGGTACG
AGTGACCCCAGCAGCAATGTACTTGACTAAATTTAGCCGGACTGGAGATAAATTTACCATTGAAGGTAAGGCTGAAAGTC
CAAATACGGTCGCAGAGTTATTACGTAATCTCGAAGCATCACAATGGTATCGCAATGCTTTTATGAATTCATTCTTGGCG
ACTGAAGAGAAAAAAGATAAGACTGCGAGTTCGCTGCTTCCTAGAGTGGAAGATGGCTATGGCAGTTTTGTTGTGACTGT
TGATTTGGGTGAAGCGGGGGTGACTACAACAGCTGATACCACCAATACATCTGTAAGCACGGATAAGGGGGCAGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

87.793

100

0.878
  comN Acinetobacter baylyi ADP1

73.039

95.775

0.7