Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MMY79_RS01515 Genome accession   NZ_CP094657
Coordinates   316644..317702 (+) Length   352 a.a.
NCBI ID   WP_252611508.1    Uniprot ID   -
Organism   Acinetobacter sp. XS-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311644..322702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY79_RS01500 (MMY79_01500) - 312709..313041 (+) 333 WP_252611502.1 hypothetical protein -
  MMY79_RS01505 (MMY79_01505) - 313044..313868 (+) 825 WP_252611504.1 putative RNA methyltransferase -
  MMY79_RS01510 (MMY79_01510) ponA 313922..316483 (-) 2562 WP_252611506.1 penicillin-binding protein PBP1a -
  MMY79_RS01515 (MMY79_01515) pilM 316644..317702 (+) 1059 WP_252611508.1 pilus assembly protein PilM Machinery gene
  MMY79_RS01520 (MMY79_01520) pilN 317702..318343 (+) 642 WP_252611510.1 PilN domain-containing protein Machinery gene
  MMY79_RS01525 (MMY79_01525) pilO 318340..319089 (+) 750 WP_252611513.1 type 4a pilus biogenesis protein PilO Machinery gene
  MMY79_RS01530 (MMY79_01530) pilP 319100..319627 (+) 528 WP_252611515.1 pilus assembly protein PilP Machinery gene
  MMY79_RS01535 (MMY79_01535) pilQ 319690..321813 (+) 2124 WP_252611517.1 type IV pilus secretin PilQ family protein Machinery gene
  MMY79_RS01540 (MMY79_01540) aroK 321825..322394 (+) 570 WP_252611518.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38976.61 Da        Isoelectric Point: 4.4522

>NTDB_id=670414 MMY79_RS01515 WP_252611508.1 316644..317702(+) (pilM) [Acinetobacter sp. XS-4]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTSNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVGRAFSVFADSLPMGANTIGILDIGHTMTTLSVMQSGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEVLEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDIQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=670414 MMY79_RS01515 WP_252611508.1 316644..317702(+) (pilM) [Acinetobacter sp. XS-4]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTGGAAAGCTATGCTTTGATGCCTTTACCCGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCAGAGGCAGTGGCAGAAGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCAGTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACCATCGAAATGGATGCAGATATGAATGATGATGAGCGAGAAGTTCAGAT
TCGTTTAGATGCGGAGCAGTATATACCGTTCCCTTTGGATGAGGTGAGTCTTGATTTTGAGGTTTTACCAGATCGACTGC
CTAATCCAAACCGTGTAAATGTACTTCTAGTTGCAACAAGAACAGAAAATGTTGAAACACGAGTAGAAGTGCTGGAACTG
GTGGATTTAACGCCTAAGCTTGCTGATGTCGAAAGTTATGCTGTCGGGCGTGCTTTTAGTGTATTTGCTGATAGTTTGCC
CATGGGTGCAAATACCATTGGTATTTTAGATATCGGCCATACCATGACCACATTATCGGTTATGCAAAGTGGCAAAATCA
TTTATACCCGTGAACAAGTCTTCGGTGGCAAACAGCTTACACTGGAAATTCAAAGCCGTTATGGTTTGTCTTTAGAAGAA
GCAGGGCGAGCTAAAAAAGAGCGCTCTTTACCCGATGACTATGATATCGAAGTTTTAGAGCCATTTTTAGATGCGGTCGT
GCAGCAAGCGGCTAGGTCTCTACAATTTTTCTTTTCTTCGTCACAGTTCAATGAAATAGACCATATTTTACTAGCAGGTG
GGAATGCCAATATTCCTGGGCTTGCTAAACTGTTGCAACAAAAGCTTGGTTACCGTGTGACCATTGCCAATCCATTTTTA
CAAATGGGTTTTTCTCCTCAAGTCGACATTCAAAAAATTGAAAATGATGCTTCATCATTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

96.023

100

0.96
  comM Acinetobacter nosocomialis M2

96.023

100

0.96
  comM Acinetobacter baylyi ADP1

81.818

100

0.818
  pilM Legionella pneumophila strain ERS1305867

41.808

100

0.42